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OPD is a public database for storing and disseminating mass spectrometry based proteomics data. The database currently contains roughly 3,000,000 spectra representing experiments from 5 different organisms.
This article outlines the benefits of a public repository and
introduces the OPD database:
The need for a public proteomics
repository (commentary). Nature
Biotechnology. April
2004.
John T Prince, Mark W Carlson, Rong Wang, Peng Lu &
Edward M Marcotte
Click here to view article at Nature Biotech
Download in PDF format
| Escherichia coli | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Acc# | Name | Description | MS data | Analysis | Publications | researcher/ institution |
|||||
| more | proc | MSp | files | params | summary | ||||||
| Heat Shock | |||||||||||
opd00001_ECOLI |
021112.EcoliSol37.1 | Wild type cells (held at normal 37 degC) | txt | txt | txt | .raw.zip (78MB) .mzXML.zip (87MB) .msdat.zip (88MB) |
.sequest.zip (109 MB) .fasta.gz |
na | .seqsum.zip | Prince et al. | John Prince UT-Austin |
opd00002_ECOLI |
021112.Ecoli42.goodRun.1 | Cells held for 5 minutes at 42 degC | txt | txt | txt | .raw.zip (78MB) .mzXML.zip (88MB) .msdat.zip (88MB) |
na | na | na | Prince et al. | John Prince UT-Austin |
| Isotope labeled | |||||||||||
opd00003_ECOLI |
030211.jp45c2.14N15Ng.1 | Two E. coli samples grown in identical minimal media (glucose), labelled 14N and 15N, mixed, and analyzed. | txt | txt | txt | .raw.zip (98MB) .mzXML.zip (110MB) .msdat.zip (106MB) |
.sequest.zip (128MB) .fasta.gz |
na | .seqsum.zip | Prince et al. | John Prince UT-Austin |
| Dilution Series | |||||||||||
opd00004_ECOLI |
021011.jp32A.5ul.2 | 5uL analyzed | na | txt | txt | .raw.zip
(89MB) .mzXML.zip (101MB) .msdat.zip (100MB) |
na | na | na | Prince et al. | John Prince UT-Austin |
opd00005_ECOLI |
021016.jp32A.10ul.3 | 10uL analyzed | na | txt | txt | .raw.zip
(96MB) .mzXML.zip (108MB) .msdat.zip (100MB) |
.sequest.zip (110MB) .fasta.gz |
na | .seqsum.zip
.prophsum.zip |
Prince et al. | John Prince UT-Austin |
opd00006_ECOLI |
021010.jp32A.15ul.1 | 15uL analyzed | na | txt | txt | .raw.zip
(97MB) .mzXML.zip (109MB) .msdat.zip (109MB) |
.sequest.zip (108MB) .fasta.gz |
na | .seqsum.zip
.prophsum.zip |
Prince et al. | John Prince UT-Austin |
| APEX - E. coli | |||||||||||
opd00095_ECOLI |
5-16-06 | NA | NA | NA | NA | .raw.zip (100MB) .mzXML.zip (112MB) |
.sequest.zip (296MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
opd00096_ECOLI |
5-18-06 | NA | NA | NA | NA | .raw.zip (95MB) .mzXML.zip (107MB) |
.sequest.zip (282MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
opd00097_ECOLI |
5-19-06 | NA | NA | NA | NA | .raw.zip (88MB) .mzXML.zip (99MB) |
.sequest.zip (264MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
| Mycobacterium smegmatis | |||||||||||
| Acc# | Name | Description | MS data | Analysis | Publications | researcher/ institution |
|||||
| more | proc | MSp | files | params | summary | ||||||
| Proteome Analysis - Exponential Phase | |||||||||||
opd00007_MYCSM |
3-03-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in late exponential phase. (OD600=1.5) (trypsin digestion) |
txt | txt | txt | .RAW.zip (99MB) .mzXML.zip (111MB) |
.sequest.zip (76MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00008_MYCSM |
4-03-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=1.0) (trypsin digestion) |
txt | txt | txt | .RAW.zip (94MB) .mzXML.zip (106MB) |
.sequest.zip (88MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00009_MYCSM |
6-17-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=0.8) (trypsin digestion) |
txt | txt | txt | .RAW.zip (93MB) .mzXML.zip (105MB) |
.sequest.zip (120MB) .fasta.gz |
NA | .seqsum.zip
.prophsum.zip |
Wang et al. | Rong Wang UT-Austin |
opd00010_MYCSM |
6-18-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=0.8) (trypsin digestion) |
txt | txt | txt | .RAW.zip (94MB) .mzXML.zip (105MB) |
.sequest.zip (113MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00011_MYCSM |
6-28-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=0.8) (trypsin digestion) |
txt | txt | txt | .RAW.zip (94MB) .mzXML.zip (106MB) |
.sequest.zip (117MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00012_MYCSM |
7-11-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=0.7) (trypsin digestion) |
txt | txt | txt | .RAW.zip (92MB) .mzXML.zip (103MB) |
.sequest.zip (105MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00013_MYCSM |
7-13-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=0.7) (trypsin digestion) |
txt | txt | txt | .RAW.zip (84MB) .mzXML.zip (94MB) |
.sequest.zip (106MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00014_MYCSM |
7-17-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in early exponential phase. (OD600=0.3) (trypsin digestion) |
txt | txt | txt | .RAW.zip (80MB) .mzXML.zip (89MB) |
.sequest.zip (95MB) .fasta.gz |
NA | .seqsum.zip
.prophsum.zip |
Wang et al. | Rong Wang UT-Austin |
opd00015_MYCSM |
7-19-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in early exponential phase. (OD600=0.4) (trypsin digestion) |
txt | txt | txt | .RAW.zip (78MB) .mzXML.zip (87MB) |
.sequest.zip (97MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00016_MYCSM |
7-20-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=0.8) (trypsin digestion) |
txt | txt | txt | .RAW.zip (80MB) .mzXML.zip (90MB) |
.sequest.zip (94MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00017_MYCSM |
7-21-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=0.6) (trypsin digestion) |
txt | txt | txt | .RAW.zip (79MB) .mzXML.zip (89MB) |
.sequest.zip (94MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00018_MYCSM |
7-22-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in middle exponential phase. (OD600=1.0) (trypsin digestion) |
txt | txt | txt | .RAW.zip (77MB) .mzXML.zip (86MB) |
.sequest.zip (90MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00019_MYCSM |
7-23-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in late exponential phase. (OD600=1.2) (trypsin digestion) |
txt | txt | txt | .RAW.zip (78MB) .mzXML.zip (87MB) |
.sequest.zip (89MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00020_MYCSM |
7-24-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in late exponential phase. (OD600=1.5) (trypsin digestion) |
txt | txt | txt | .RAW.zip (93MB) .mzXML.zip (104MB) |
.sequest.zip (81MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00021_MYCSM |
7-25-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in late exponential phase. (OD600=1.2) (trypsin digestion) |
txt | txt | txt | .RAW.zip (79MB) .mzXML.zip (88MB) |
.sequest.zip (97MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
| Proteome Analysis - Stationary Phase | |||||||||||
opd00022_MYCSM |
1-27-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (101MB) .mzXML.zip (113MB) |
.sequest.zip (102MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00023_MYCSM |
2-04-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (94MB) .mzXML.zip (105MB) |
.sequest.zip (104MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00024_MYCSM |
2-16-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (86MB) .mzXML.zip (97MB) |
.sequest.zip (82MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00025_MYCSM |
3-04-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (90MB) .mzXML.zip (101MB) |
.sequest.zip (75MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00026_MYCSM |
4-12-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (77MB) .mzXML.zip (87MB) |
.sequest.zip (51MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00027_MYCSM |
6-05-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (70MB) .mzXML.zip (78MB) |
.sequest.zip (75MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00028_MYCSM |
6-06-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (93MB) .mzXML.zip (104MB) |
.sequest.zip (110MB) .fasta.gz |
NA | .seqsum.zip .prophsum.zip |
Wang et al. | Rong Wang UT-Austin |
opd00029_MYCSM |
6-09-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (80MB) .mzXML.zip (89MB) |
.sequest.zip (89MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00030_MYCSM |
6-16-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (86MB) .mzXML.zip (96MB) |
.sequest.zip (98MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
opd00031_MYCSM |
7-18-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) |
txt | txt | txt | .RAW.zip (74MB) .mzXML.zip (83MB) |
.sequest.zip (86MB) .fasta.gz |
NA | .seqsum.zip | Wang et al. | Rong Wang UT-Austin |
| Miscellaneous - Stationary Phase | |||||||||||
opd00032_MYCSM |
4-23-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) | txt | txt | txt | .raw.zip (107MB) .mzXML.zip (97MB) .msdat.zip (113MB) |
.sequest.zip (93MB) .fasta.gz |
na | .seqsum.zip | Prince et al. | Rong Wang UT-Austin |
opd00033_MYCSM |
4-24-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in stationary phase. (OD600=1.9) (trypsin digestion) | txt | txt | txt | .raw.zip (86MB) .mzXML.zip (97MB) .msdat.zip (113MB) |
.sequest.zip (83MB) .fasta.gz |
na | .seqsum.zip | Prince et al. | Rong Wang UT-Austin |
| Drug Treatment - 5-Cl-PZA | |||||||||||
opd00052_MYCSM |
10-28-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 4 hour 5-Cl-PZA (1 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (105MB) .mzXML.zip (117MB) |
.sequest.zip (294MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00053_MYCSM |
11-01-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour 5-Cl-PZA (2 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (115MB) .mzXML.zip (129MB) |
.sequest.zip (321MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00054_MYCSM |
11-03-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 20 hour 5-Cl-PZA (1 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (122MB) .mzXML.zip (138MB) |
.sequest.zip (341MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00055_MYCSM |
11-07-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 8 hour 5-Cl-PZA (1 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (114MB) .mzXML.zip (128MB) |
.sequest.zip (321MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00056_MYCSM |
8-18-05 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour 5-Cl-PZA (1 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (130MB) .mzXML.zip (147MB) |
.sequest.zip (310MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00057_MYCSM |
9-25-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour 5-Cl-PZA (1 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (126MB) .mzXML.zip (143MB) |
.sequest.zip (355MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00058_MYCSM |
9-30-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour 5-Cl-PZA (1 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (109MB) .mzXML.zip (123MB) |
.sequest.zip (307MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00059_MYCSM |
8-15-05 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour 5-Cl-PZA (2 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (114MB) .mzXML.zip (127MB) |
.sequest.zip (327MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
| Drug Treatment - EMB | |||||||||||
opd00060_MYCSM |
10-02-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour EMB (10 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (116MB) .mzXML.zip (130MB) |
.sequest.zip (304MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00061_MYCSM |
10-03-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour EMB (10 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (120MB) .mzXML.zip (136MB) |
.sequest.zip (313MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00062_MYCSM |
10-05-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour EMB (10 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (127MB) .mzXML.zip (144MB) |
.sequest.zip (335MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00063_MYCSM |
11-05-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 8 hour EMB (10 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (99MB) .mzXML.zip (112MB) |
.sequest.zip (226MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00064_MYCSM |
11-09-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 16 hour EMB (2 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (112MB) .mzXML.zip (126MB) |
.sequest.zip (255MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00065_MYCSM |
11-11-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour EMB (4 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (122MB) .mzXML.zip (138MB) |
.sequest.zip (276MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00066_MYCSM |
11-12-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 20 hour EMB (4 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (114MB) .mzXML.zip (129MB) |
.sequest.zip (257MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00067_MYCSM |
5-01-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour EMB (4 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (64MB) .mzXML.zip (72MB) |
.sequest.zip (109MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00068_MYCSM |
5-04-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 16 hour EMB (2 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (60MB) .mzXML.zip (67MB) |
.sequest.zip (100MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00069_MYCSM |
9-27-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour EMB (10 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (121MB) .mzXML.zip (136MB) |
.sequest.zip (316MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
| Drug Treatment - INH | |||||||||||
opd00070_MYCSM |
1-29-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour INH (16 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (95MB) .mzXML.zip (107MB) |
.sequest.zip (107MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00071_MYCSM |
1-31-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour INH (8 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (104MB) .mzXML.zip (116MB) |
.sequest.zip (128MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00072_MYCSM |
10-28-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in 8 hour INH (16 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (80MB) .mzXML.zip (90MB) |
.sequest.zip (74MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00073_MYCSM |
11-11-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in 16 hour INH (8 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (70MB) .mzXML.zip (79MB) |
.sequest.zip (63MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00074_MYCSM |
12-27-03 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour INH (10 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (78MB) .mzXML.zip (88MB) |
.sequest.zip (68MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00075_MYCSM |
2-01-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour INH (4 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (100MB) .mzXML.zip (112MB) |
.sequest.zip (114MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00076_MYCSM |
2-02-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour INH (30 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (99MB) .mzXML.zip (111MB) |
.sequest.zip (120MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00077_MYCSM |
2-04-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 8 hour INH (8 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (106MB) .mzXML.zip (119MB) |
.sequest.zip (128MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00078_MYCSM |
2-18-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour INH (4 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (106MB) .mzXML.zip (119MB) |
.sequest.zip (126MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00079_MYCSM |
2-20-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour INH (30 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (99MB) .mzXML.zip (111MB) |
.sequest.zip (119MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00080_MYCSM |
1-06-05 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour INH (8 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (111MB) .mzXML.zip (125MB) |
.sequest.zip (311MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00081_MYCSM |
1-07-05 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour INH (8 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (108MB) .mzXML.zip (121MB) |
.sequest.zip (302MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00082_MYCSM |
1-10-05 | Protein profiling of Mycobacterial smegmatis (mc2155) in 12 hour INH (30 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (83MB) .mzXML.zip (94MB) |
.sequest.zip (241MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00083_MYCSM |
1-11-05 | Protein profiling of Mycobacterial smegmatis (mc2155) in 24 hour INH (4 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (93MB) .mzXML.zip (105MB) |
.sequest.zip (267MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00084_MYCSM |
1-31-05 | Protein profiling of Mycobacterial smegmatis (mc2155) in 8 hour INH (4 ug/ml) treatment. (trypsin digestion) | NA | NA | NA | .raw.zip (121MB) .mzXML.zip (136MB) |
.sequest.zip (337MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
| Drug Treatment - Control | |||||||||||
opd00085_MYCSM |
4-17-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in early exponential phase. (OD600=0.4) (trypsin digestion) | txt | NA | NA | .raw.zip (85MB) .mzXML.zip (96MB) |
.sequest.zip (129MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
opd00086_MYCSM |
4-18-04 | Protein profiling of Mycobacterial smegmatis (mc2155) in early exponential phase. (OD600=0.6) (trypsin digestion) | txt | NA | NA | .raw.zip (128MB) .mzXML.zip (144MB) |
.sequest.zip (135MB) .fasta.gz |
.params | NA | Prince et al. | Rong Wang UT-Austin |
| Saccharomyces cerevisiae | |||||||||||
| Acc# | Name | Description | MS data | Analysis | Publications | researcher/ institution |
|||||
| more | proc | MSp | files | params | summary | ||||||
opd00034_YEAST |
6-04-03-YPD_test | DBY8724 yeast cells cultured in YPD medium at 30 deg C (OD600 = 0.8) | txt | na | txt | .raw.zip
(96MB) .mzXML.zip (107MB) |
.sequest.zip (134MB) .fasta.gz |
na | .seqsum.zip | Prince et al. | Peng Lu UT-Austin |
opd00035_YEAST |
6-07-03-YM_test | DBY8724 yeast cells cultured in YM medium at 30 deg C (OD600 = 0.8) | txt | na | txt | .raw.zip
(94MB) .mzXML.zip (106MB) |
.sequest.zip (131MB) .fasta.gz |
na | .seqsum.zip | Prince et al. | Peng Lu UT-Austin |
| APEX YMD | |||||||||||
opd00047_YEAST |
05-27-05_YM_N14050505_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in synthetic minimal medium (YMD) in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .RAW.zip (95MB) .mzXML.zip (105MB) |
.sequest.zip (288MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00048_YEAST |
05-31-05_YM_N14050505_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in synthetic minimal medium (YMD) in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .RAW.zip (99MB) .mzXML.zip (110MB) |
.sequest.zip (299MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00049_YEAST |
06-01-05_YM_N14050505_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in synthetic minimal medium (YMD) in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .RAW.zip (99MB) .mzXML.zip (108MB) |
.sequest.zip (296MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00050_YEAST |
06-14-05_YM_N14050505_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in synthetic minimal medium (YMD) in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .RAW.zip (98MB) .mzXML.zip (108MB) |
.sequest.zip (296MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00051_YEAST |
06-15-05_YM_N14050505_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in synthetic minimal medium (YMD) in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .RAW.zip (97MB) .mzXML.zip (107MB) |
.sequest.zip (295MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00098_YEAST |
06-24-04_YM_N14050505_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in synthetic minimal medium (YMD) in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .raw.zip (98MB) .mzXML.zip (110MB) |
.sequest.zip (287MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
| APEX YPD | |||||||||||
opd00038_YEAST |
04-22-05_YPD041805_N14_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in YPD medium in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .raw.zip (106MB) .mzxml.zip (119MB) |
.sequest.zip (314MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00039_YEAST |
04-23-05_YPD041805_N14_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in YPD medium in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .raw.zip (111MB) .mzxml.zip (125MB) |
.sequest.zip (325MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00040_YEAST |
04-24-05_YPD041805_N14_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in YPD medium in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .raw.zip (98MB) .mzxml.zip (110MB) |
.sequest.zip (299MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00041_YEAST |
04-28-05_YPD041805_N14_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in YPD medium in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .raw.zip (116MB) .mzxml.zip (130MB) |
.sequest.zip (348MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
opd00042_YEAST |
04-30-05_YPD041805_N14_14_45_v0.4 | Protein profiling of DBY8724 yeast cells cultured in YPD medium in early log phase (OD600 = 0.6-0.8) (trypsin digestion). | txt | txt | txt | .raw.zip (116MB) .mzxml.zip (130MB) |
.sequest.zip (352MB) .fasta.gz |
NA | NA | Prince et al. | Peng Lu UT-Austin |
| One Carbon Metabolism | |||||||||||
opd00043_YEAST |
6-21-04-YM_N14N15_DAYSer040704_14_45_v0.4 | NA | NA | NA | NA | .raw.zip (110MB) .mzxml.zip (125MB) |
.sequest.zip (299MB) .fasta.gz |
NA | .seqsum.zip
.prophsum.zip |
Prince et al. | Peng Lu UT-Austin |
opd00044_YEAST |
6-22-04-YM_N14N15_DAYGly040704_14_45_v0.4 | NA | NA | NA | NA | .raw.zip (110MB) .mzxml.zip (124MB) |
.sequest.zip (295MB) .fasta.gz |
NA | .seqsum.zip
.prophsum.zip |
Prince et al. | Peng Lu UT-Austin |
opd00045_YEAST |
6-23-04_YM_N14N15_SCYGly040704_14_45_v0.4 | NA | NA | NA | NA | .raw.zip (102MB) .mzxml.zip (115MB) |
.sequest.zip (274MB) .fasta.gz |
NA | .seqsum.zip | Prince et al. | Peng Lu UT-Austin |
opd00046_YEAST |
6-24-04_YM_N14N15_SCYSer040704_14_45_v0.4 | NA | NA | NA | NA | .raw.zip (103MB) .mzxml.zip (117MB) |
.sequest.zip (278MB) .fasta.gz |
NA | .seqsum.zip | Prince et al. | Peng Lu UT-Austin |
| Homo sapiens | |||||||||||
| Acc# | Name | Description | MS data | Analysis | Publications | researcher/ institution |
|||||
| more | proc | MSp | files | params | summary | ||||||
| Human Cell Lines | |||||||||||
opd00036_HUMAN |
2-24.mrk.sqcc.1-24- | SqCC human cell line used to model head and neck cancer. Grown under normal conditions. No perturbation. | na | txt | txt | .raw.zip
(104MB) .mzXML.zip (116MB) .msdat.zip (118MB) |
na | na | .seqsum.zip | Prince et al. | Mark Carlson UT-Austin |
opd00037_HUMAN |
6-26-03.mrk | SiHa human cell line used to model cervical cancer. Grown under normal conditions. No perturbation. | na | txt | txt | .raw.zip (91MB) .mzXML.zip (102MB) .msdat.zip (103MB) |
na | na | na | Prince et al. | Mark Carlson UT-Austin |
| Mus musculus | |||||||||||
| Acc# | Name | Description | MS data | Analysis | Publications | researcher/ institution |
|||||
| more | proc | MSp | files | params | summary | ||||||
| APEX - cytosolic | |||||||||||
opd00087_MOUSE |
7-27-04 | NA | NA | NA | NA | .raw.zip (132MB) .mzXML.zip (149MB) |
.sequest.zip (353MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
opd00088_MOUSE |
7-28-04 | NA | NA | NA | NA | .raw.zip (125MB) .mzXML.zip (140MB) |
.sequest.zip (381MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
opd00089_MOUSE |
7-30-04 | NA | NA | NA | NA | .raw.zip (120MB) .mzXML.zip (136MB) |
.sequest.zip (370MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
opd00090_MOUSE |
9-28-04 | NA | NA | NA | NA | .raw.zip (116MB) .mzXML.zip (131MB) |
.sequest.zip (311MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
| APEX - nuclear | |||||||||||
opd00091_MOUSE |
9-20-04 | NA | NA | NA | NA | .raw.zip (107MB) .mzXML.zip (121MB) |
.sequest.zip (291MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
opd00092_MOUSE |
9-21-04 | NA | NA | NA | NA | .raw.zip (105MB) .mzXML.zip (118MB) |
.sequest.zip (286MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
opd00093_MOUSE |
9-23-04 | NA | NA | NA | NA | .raw.zip (105MB) .mzXML.zip (118MB) |
.sequest.zip (285MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
opd00094_MOUSE |
9-24-04 | NA | NA | NA | NA | .raw.zip (104MB) .mzXML.zip (117MB) |
.sequest.zip (284MB) .fasta.gz |
NA | NA | Prince et al. | Rong Wang UT-Austin |
| Miscellaneous | |||||||||||
| Acc# | Name | Description | MS data | Analysis | Publications | researcher/ institution |
|||||
| more | proc | MSp | files | params | summary | ||||||
| Protein Finder - Test Sets | |||||||||||
opd00099_PROTS |
6prot_75pmol_each | info | NA | NA | NA | .raw.zip (37MB) .mzXML.zip (42MB) |
NA | NA | .seqsum.zip .prtfinder.zip |
Prince et al. | Aleksey Nakorchevskiy UT-Austin |
opd00100_PROTS |
6prot_gradient | info | NA | NA | NA | .raw.zip (35MB) .mzXML.zip (39MB) |
NA | NA | .seqsum.zip .prtfinder.zip |
Prince et al. | Aleksey Nakorchevskiy UT-Austin |
opd00101_PROTS |
9prot_mix | info | NA | NA | NA | .raw.zip (61MB) .mzXML.zip (68MB) |
NA | NA | .seqsum.zip .prtfinder.zip |
Prince et al. | Aleksey Nakorchevskiy UT-Austin |
opd00102_PROTS |
catalase | info | NA | NA | NA | .raw.zip (8MB) .mzXML.zip (9MB) |
NA | NA | .seqsum.zip .prtfinder.zip |
Prince et al. | Aleksey Nakorchevskiy UT-Austin |
opd00103_PROTS |
lactoperoxidase | info | NA | NA | NA | .raw.zip (8MB) .mzXML.zip (9MB) |
NA | NA | .seqsum.zip .prtfinder.zip |
Prince et al. | Aleksey Nakorchevskiy UT-Austin |
In general, any utility that handles the .zip format should be able to unzip these files. Please be aware that some of the zip files are very large and/or contain tens of thousands of files (i.e. the .sequest.zip files) and may take some time to unzip.
Journal Articles (Data in Supplementary Material):
Journal Articles (Data in Supplementary Material):
This site is a public database for protein expression data, especially derived from mass spectrometry. We welcome suggestions, links, and, in particular mass spectrometry data from complex protein/peptide samples. Please contact:
