MS/MS Shotgun Proteomics Data Repository

Christine Vogel
Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, 2500 Speedway, MBB 3.210, Austin, TX 78712
Email: cvogel at mail utexas edu

Notes

This website provides raw/processed data files from (LC/)LC-MS/MS experiments, information on experimental procedures, data collection and post-processing.

General information

Data

Data_01 - Human - Orbitrap - Musashi-1 overexpression in T293 cells

Abreu et al, J Biol Chem. 2009

Data_02 - Yeast - Orbitrap - Wild-type grown in rich medium (YPD), harvested in log-phase

Ramakrishnan et al, Bioinformatics, 2009
Ramakrishnan et al, Bioinformatics, 2009b
Abreu et al, Molecular Systems Biology, 2009
This dataset is part of what we consider a 'gold-standard' of protein expression in wild-type yeast, grown to log-phase in rich medium (YPD).

Data_03 - E. coli - Orbitrap - Wild-type grown in minimal medium (M9), harvested in log-phase

Ramakrishnan et al, Bioinformatics, 2009
Ramakrishnan et al, Bioinformatics, 2009b
Abreu et al, Molecular Systems Biology, 2009

Data_04 - Yeast - LCQ - Polysomal fraction (sucrose gradient)

Ramakrishnan et al, Bioinformatics, 2009
Ramakrishnan et al, Bioinformatics, 2009b

Data_05 - Human - Orbitrap - Daoy medulloblastoma wildtype, cell lysate

Ramakrishnan et al, Bioinformatics, 2009
Ramakrishnan et al, Bioinformatics, 2009b
Galante et al, RNA Biology, 2009
Abreu et al, Molecular Systems Biology, 2009

Data_06 - Human - LCQ - Daoy medulloblastoma, cell lysate

Ramakrishnan et al, Bioinformatics, 2009
Ramakrishnan et al, Bioinformatics, 2009b

Data_07 - Human - Orbitrap - HEK293T embryonic kidney cells, overexpressing GFP, cell lysate and pellet

Ramakrishnan et al, Bioinformatics, 2009b

Data_08 - Human - Orbitrap - U251 gliolastoma, GFP transfected, cell lysate and pellet

Galante et al, RNA Biology, 2009

Data_11 - Rice (Oryza sativa) - Orbitrap - leaves, cell lysate

Vogel et al, Molecular Systems Biology, 2010

Data_12 - Pseudomonas aeruginosa - Orbitrap - strain PA14, cell lysate

Vogel et al, Molecular Systems Biology, 2010

Data_13 - UPS2 (Sigma) - Orbitrap - in solution




- Coming soon -

Data_09 - Human - Orbitrap - K562 chronic myelogenous leukemia, cell lysate and pellet

Unpublished

Data_10 - Human - Orbitrap - GM12878 lymphoblastoid cell line, cell lysate and pellet

Unpublished

Data_14 - 9 proteins mixed into complex human background - Orbitrap

Unpublished

Data_15 - Yeast response to diamide - Orbitrap

Unpublished

Data_16 - Musashi 1 knockdown in Daoy medulloblastoma cells - Orbitrap

Unpublished


Other links

Please do not hesitate to contact me for any additional questions.


C. Vogel, cvogel at mail utexas edu
July 2010