#FILE	./MSups_7ul.prot.xml
#PROTEIN	Number	Name	Probability	Total peptide counts	Unique peptides	No. indistinguishable proteins	Peptides	Degenerate Proteins	Annotation
# DATABASE	/project/marcotte/marcotte/ms/database/ms_ups2_sp_CON_shuff.fasta
# CUTOFF	PROBABILITY	0.00	FPR	0.560
# CUTOFF	PROBABILITY	0.10	FPR	0.152
# CUTOFF	PROBABILITY	0.20	FPR	0.152
# CUTOFF	PROBABILITY	0.30	FPR	0.105
# CUTOFF	PROBABILITY	0.40	FPR	0.058
# CUTOFF	PROBABILITY	0.50	FPR	0.037
# CUTOFF	PROBABILITY	0.60	FPR	0.037
# CUTOFF	PROBABILITY	0.70	FPR	0.010
# CUTOFF	PROBABILITY	0.80	FPR	0.010
# CUTOFF	PROBABILITY	0.90	FPR	0.003
# CUTOFF	PROBABILITY	0.95	FPR	0.003
# CUTOFF	PROBABILITY	0.96	FPR	0.003
# CUTOFF	PROBABILITY	0.97	FPR	0.001
# CUTOFF	PROBABILITY	0.98	FPR	0.001
# CUTOFF	PROBABILITY	0.99	FPR	0.001
# CUTOFF	PROBABILITY	1.00	FPR	0.000
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.50	0.40	0.058	0.037
# PROBABILITY CUT (0.05 FDR)	0.438
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.50	0.40	0.058	0.037
# PROBABILITY CUT (0.05 FDR)	0.438
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	1635
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	221
# PROTEIN	Number	Name	Probability	Contributing_spectral_counts	All_unique_peptides	No._indistinguishable_proteins	Peptides	Degenerate Proteins	Annotation
#	PEPTIDE	Protein_Name	PeptideSequence_Charge	Degenerate?	Spectral counts	Contributing?	Adjusted NPS prob	Weight_(degeneracy)
# DATA
PROTEIN	1	RETBP_HUMAN_UPS	0.9662	8	2	1	FSGTWYAMAK LLNLDGTCADSYSFVFSR	RETBP_HUMAN_UPS	P02753ups
PROTEIN	2	CO5_HUMAN_UPS	0.9941	37	1	1	AFTECCVVASQLR	CO5_HUMAN_UPS	P01031ups
PROTEIN	3	MYG_HUMAN_UPS	1.0000	17	7	1	DMASNYKELGFQG GLSDGEWQLVLNVWGK HGATVLTALGGILK HGATVLTALGGILKK VEADIPGHGQEVLIR VEADIPGHGQEVLIRLFKGHPETLEK YLEFISECIIQVLQSK	MYG_HUMAN_UPS	P02144ups
PROTEIN	4	EGF_HUMAN_UPS	0.6942	6	2	1	DLKWWELR YACNCVVGYIGER	EGF_HUMAN_UPS	P01133ups
PROTEIN	5	HBA_HUMAN_UPS	1.0000	27	5	1	FLASVSTVLTSK MFLSFPTTK TYFPHFDLSHGSAQVK VADALTNAVAHVDDMPNALSALSDLHAHK VGAHAGEYGAEALER	HBA_HUMAN_UPS	P69905ups
PROTEIN	6	NQO1_HUMAN_UPS	0.8474	2	1	1	IQILEGWK	NQO1_HUMAN_UPS	P15559ups
PROTEIN	7	PPIA_HUMAN_UPS	1.0000	29	7	1	EGMNIVEAMER FEDENFILK IIPGFMCQGGDFTR SIYGEKFEDENFILK VKEGMNIVEAMER VSFELFADK VSFELFADKVPK	PPIA_HUMAN_UPS	P62937ups
PROTEIN	8	KCRM_HUMAN_UPS	1.0000	20	11	1	ELFDPIISDR GGDDLDPNYVLSSRVRTGR GTGGVDTAAVGSVFDVSNADR LGSSEVEQVQLVVDGVK LNYKPEEEYPDLSK LSVEALNSLTGEFK LSVEALNSLTGEFKGK PVSPLLLASGMARDWPDAR SFLVWVNEEDHLR VLTLELYK VLTLELYKK	KCRM_HUMAN_UPS	P06732ups
PROTEIN	9	CAH2_HUMAN_UPS	1.0000	172	9	1	AVQQPDGLAVLGIFLK EPISVSSEQVLK GGPLDGTYR QSPVDIDTHTAK QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR SADFTNFDPR VVDVLDSIK YAAELHLVHWNTK YDPSLKPLSVSYDQATSLR	CAH2_HUMAN_UPS	P00918ups
PROTEIN	10	UBC9_HUMAN_UPS	0.9969	5	3	1	DHPFGFVAVPTK GTPWEGGLFK MLFKDDYPSSPPK	UBC9_HUMAN_UPS	P63279ups
PROTEIN	11	LEP_HUMAN_UPS	1.0000	219	7	1	DLLHVLAFSK INDISHTQSVSSK LQGSLQDMLWQLDLSPGC MDQTLAVYQQILTSMPSR NVIQISNDLENLR QKVTGLDFIPGLHPILTLSK VTGLDFIPGLHPILTLSK	LEP_HUMAN_UPS	P41159ups
PROTEIN	12	SUMO1_HUMAN_UPS	1.0000	19	8	1	AEISMLEGAVLDIR DFETLKVDFLSK IAYSKDFETLKVDFLSK LLLEYLEEK LLLEYLEEKYEEHLYER MSPILGYWK VDFLSKLPEMLK VDFLSKLPEMLKMFEDR	SUMO1_HUMAN_UPS	P63165ups
PROTEIN	13	shuff1_HBA_HUMAN_UPS	0.9941	1	1	1	DSYVCDKFDLGLHVENALFVTAALGSK	shuff1_HBA_HUMAN_UPS	P69905ups
PROTEIN	14	HBB_HUMAN_UPS	1.0000	52	9	1	EFTPPVQAAYQK FFESFGDLSTPDAVMGNPK KVLGAFSDGLAHLDNLK LLGNVLVCVLAHHFGK LLVVYPWTQR SAVTALWGK VLGAFSDGLAHLDNLK VNVDEVGGEALGR VVAGVANALAHK	HBB_HUMAN_UPS	P68871ups
PROTEIN	15	CAH1_HUMAN_UPS	1.0000	186	15	1	ADGLAVIGVLMK ADGLAVIGVLMKVGEANPK EIINVGHSFHVNFEDNDNR EIINVGHSFHVNFEDNDNRSVLK ESISVSSEQLAQFR GGPFSDSYR HDTSLKPISVSYNPATAK LFQFHFHWGSTNEHGSEHTVDGVK LYPIANGNNQSPVDIK LYPIANGNNQSPVDIKTSETK SLLSNVEGDNAVPMQHNNRPTQPLK SLLSNVEGDNAVPMQHNNRPTQPLKGR TSETKHDTSLKPISVSYNPATAK VLDALQAIK YSSLAEAASK	CAH1_HUMAN_UPS	P00915ups
PROTEIN	16	SYHC_HUMAN_UPS	1.0000	9	7	1	ASAELIEEEVAK HGAEVIDTPVFELK ILDGMFAICGVSDSK ISFDLSLAR RILDGMFAICGVSDSK YDGLVGMFDPK YDLTVPFAR	SYHC_HUMAN_UPS	P12081ups
PROTEIN	17	shuff1_GELS_HUMAN_UPS	0.9941	1	1	1	IEKDRALELLHGEEPSAEEDLASR	shuff1_GELS_HUMAN_UPS	P06396ups
PROTEIN	18	shuff1_ALBU_HUMAN_UPS	0.6676	1	2	1	DMSKAILETELCALRYK PELAPHNLNLGAVAEAR	shuff1_ALBU_HUMAN_UPS	P02768ups
PROTEIN	19	NQO2_HUMAN_UPS	0.9977	4	4	1	LALLSVTTGGTAEMYTK QGCTVTVSDLYAMNFEPR SLASDITDEQK VLAPQISFAPEIASEEER	NQO2_HUMAN_UPS	P16083ups
PROTEIN	20	PRDX1_HUMAN_UPS	1.0000	30	13	1	ATAVMPDGQFK ATAVMPDGQFKDISLSDYK GLFIIDDK GLFIIDDKGILR KLNCQVIGASVDSHFCHLAWVNTPK KQGGLGPMNIPLVSDPKR LNCQVIGASVDSHFCHLAWVNTPKK LVQAFQFTDK QGGLGPMNIPLVSDPK QGGLGPMNIPLVSDPKR QITVNDLPVGR TIAQDYGVLK TIAQDYGVLKADEGISFR	PRDX1_HUMAN_UPS	Q06830ups
PROTEIN	21	shuff1_LEP_HUMAN_UPS	0.4572	3	1	1	GWCDLIALIMVSVVR	shuff1_LEP_HUMAN_UPS	P41159ups
PROTEIN	22	CATA_HUMAN_UPS	1.0000	60	15	1	AAQKADVLTTGAGNPVGDKLNVITVGPR ADVLTTGAGNPVGDKLNVITVGPR AFYVNVLNEEQR DLFNAIATGK DPILFPSFIHSQK DPILFPSFIHSQKR DYPLIPVGK GAGAFGYFEVTHDITK GPLLVQDVVFTDEMAHFDR LCENIAGHLKDAQIFIQK LCENIAGHLKDAQIFIQKK LGPNYLHIPVNCPYR NAIHTFVQSGSHLAAR NFTEVHPDYGSHIQALLDK NFTEVHPDYGSHIQALLDKYNAEKPK	CATA_HUMAN_UPS	P04040ups
PROTEIN	23	UBIQ_HUMAN_UPS	0.9980	42	5	1	ESTLHLVLR TITLEVEPSDTIENVK TITLEVEPSDTIENVKAK TLSDYNIQK TLSDYNIQKESTLHLVLR	UBIQ_HUMAN_UPS	P62988ups
PROTEIN	24	ALBU_HUMAN_UPS	1.0000	680	49	1	AACLLPK AAFTECCQAADK AAFTECCQAADKAACLLPK ADDKETCFAEEGKK AEFAEVSK AEFAEVSKLVTDLTK ALVLIAFAQYLQQCPFEDHVK AVMDDFAAFVEK CCTESLVNR CCTESLVNRRPCFSALEVDETYVPK DVFLGMFLYEYAR EFNAETFTFHADICTLSEK EFNAETFTFHADICTLSEKER EQLKAVMDDFAAFVEK ETYGEMADCCAK FKDLGEENFK FQNALLVR HPDYSVVLLLR HPYFYAPELLFFAK HPYFYAPELLFFAKR KLVAASQAALGL KQTALVELVK KVPQVSTPTLVEVSR LCTVATLR LDELRDEGK LKECCEKPLLEK LVAASQAALGL LVNEVTEFAK LVRPEVDVMCTAFHDNEETFLK LVRPEVDVMCTAFHDNEETFLKK MPCAEDYLSVVLNQLCVLHEK PCFSALEVDETYVPK QNCELFEQLGEYK QNCELFEQLGEYKFQNALLVR QTALVELVK QTALVELVKHK RHPDYSVVLLLR RHPYFYAPELLFFAK RMPCAEDYLSVVLNQLCVLHEK RPCFSALEVDETYVPK SLHTLFGDK SLHTLFGDKLCTVATLR TCVADESAENCDKSLHTLFGDK VFDEFKPLVEEPQNLIK VPQVSTPTLVEVSR YICENQDSISSK YKAAFTECCQAADK YKAAFTECCQAADKAACLLPK YLYEIAR	ALBU_HUMAN_UPS	P02768ups