#FILE	./MSups_5ul_dynex_b.prot.xml
#PROTEIN	Number	Name	Probability	Total peptide counts	Unique peptides	No. indistinguishable proteins	Peptides	Degenerate Proteins	Annotation
# DATABASE	/project/marcotte/marcotte/ms/database/ms_ups2_sp_CON_shuff.fasta
# CUTOFF	PROBABILITY	0.00	FPR	0.149
# CUTOFF	PROBABILITY	0.10	FPR	0.062
# CUTOFF	PROBABILITY	0.20	FPR	0.062
# CUTOFF	PROBABILITY	0.30	FPR	0.062
# CUTOFF	PROBABILITY	0.40	FPR	0.062
# CUTOFF	PROBABILITY	0.50	FPR	0.048
# CUTOFF	PROBABILITY	0.60	FPR	0.026
# CUTOFF	PROBABILITY	0.70	FPR	0.016
# CUTOFF	PROBABILITY	0.80	FPR	0.016
# CUTOFF	PROBABILITY	0.90	FPR	0.007
# CUTOFF	PROBABILITY	0.95	FPR	0.002
# CUTOFF	PROBABILITY	0.96	FPR	0.002
# CUTOFF	PROBABILITY	0.97	FPR	0.002
# CUTOFF	PROBABILITY	0.98	FPR	0.002
# CUTOFF	PROBABILITY	0.99	FPR	0.002
# CUTOFF	PROBABILITY	1.00	FPR	0.000
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.50	0.40	0.062	0.048
# PROBABILITY CUT (0.05 FDR)	0.4857
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.50	0.40	0.062	0.048
# PROBABILITY CUT (0.05 FDR)	0.4857
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	1567
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	188
# PROTEIN	Number	Name	Probability	Contributing_spectral_counts	All_unique_peptides	No._indistinguishable_proteins	Peptides	Degenerate Proteins	Annotation
#	PEPTIDE	Protein_Name	PeptideSequence_Charge	Degenerate?	Spectral counts	Contributing?	Adjusted NPS prob	Weight_(degeneracy)
# DATA
PROTEIN	1	RETBP_HUMAN_UPS	0.8284	4	1	1	FSGTWYAMAK	RETBP_HUMAN_UPS	P02753ups
PROTEIN	2	CO5_HUMAN_UPS	0.9995	32	2	1	AFTECCVVASQLR CIKAFTECCVVASQLR	CO5_HUMAN_UPS	P01031ups
PROTEIN	3	MYG_HUMAN_UPS	1.0000	21	6	1	DMASNYKELGFQG GLSDGEWQLVLNVWGK HGATVLTALGGILK HGATVLTALGGILKK VEADIPGHGQEVLIRLFKGHPETLEK YLEFISECIIQVLQSK	MYG_HUMAN_UPS	P02144ups
PROTEIN	4	EGF_HUMAN_UPS	0.9725	10	1	1	DLKWWELR	EGF_HUMAN_UPS	P01133ups
PROTEIN	5	HBA_HUMAN_UPS	1.0000	19	4	1	FLASVSTVLTSK MFLSFPTTK VADALTNAVAHVDDMPNALSALSDLHAHK VGAHAGEYGAEALER	HBA_HUMAN_UPS	P69905ups
PROTEIN	6	TRFE_HUMAN_UPS	0.9992	2	2	1	PVEEYANCHLARAPNHAVVTRK PVVAEFYGSKEDPQTFYYAVAVVKK	TRFE_HUMAN_UPS	P02787ups
PROTEIN	7	UBE2C_HUMAN_UPS	0.9975	4	1	1	KYLQETYSKQVTSQEP	UBE2C_HUMAN_UPS	O00762ups
PROTEIN	8	PPIA_HUMAN_UPS	1.0000	35	11	1	FEDENFILK GSHMVNPTVFFDIAVDGEPLGR IIPGFMCQGGDFTR IIPGFMCQGGDFTRHNGTGGK ITIADCGQLE KITIADCGQLE TEWLDGKHVVFGK VKEGMNIVEAMER VSFELFADK VSFELFADKVPK VSFELFADKVPKTAENFR	PPIA_HUMAN_UPS	P62937ups
PROTEIN	9	ANXA5_HUMAN_UPS	0.9954	1	1	1	NFATSLYSMIKGDTSGDYK	ANXA5_HUMAN_UPS	P08758ups
PROTEIN	10	NEDD8_HUMAN_UPS	0.8331	1	1	1	EIEIDIEPTDKVER	NEDD8_HUMAN_UPS	Q15843ups
PROTEIN	11	shuff1_CATA_HUMAN_UPS	0.9914	1	1	1	AHTDVIFSSVNYSAVLDLGNDAGRE	shuff1_CATA_HUMAN_UPS	P04040ups
PROTEIN	12	shuff1_NQO2_HUMAN_UPS	1.0000	2	2	1	CDSTLEPTVVSNAYGRSPAGAHSPR HWADAAQEDFTKKEDIENFQITAK	shuff1_NQO2_HUMAN_UPS	P16083ups
PROTEIN	13	UBC9_HUMAN_UPS	0.9954	4	3	1	DHPFGFVAVPTK KDHPFGFVAVPTK MLFKDDYPSSPPK	UBC9_HUMAN_UPS	P63279ups
PROTEIN	14	KCRM_HUMAN_UPS	1.0000	23	9	1	ELFDPIISDR GGDDLDPNYVLSSRVRTGR LNYKPEEEYPDLSK LSVEALNSLTGEFK LSVEALNSLTGEFKGK PVSPLLLASGMARDWPDAR RGTGGVDTAAVGSVFDVSNADR SFLVWVNEEDHLR TDLNHENLKGGDDLDPNYVLSSR	KCRM_HUMAN_UPS	P06732ups
PROTEIN	15	CAH2_HUMAN_UPS	1.0000	173	9	1	AVQQPDGLAVLGIFLK KYAAELHLVHWNTKYGDFGK LIQFHFHWGSLDGQGSEHTVDKK QSPVDIDTHTAK QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR SADFTNFDPR YAAELHLVHWNTK YAAELHLVHWNTKYGDFGK YDPSLKPLSVSYDQATSLR	CAH2_HUMAN_UPS	P00918ups
PROTEIN	16	LEP_HUMAN_UPS	1.0000	112	5	1	DLLHVLAFSK INDISHTQSVSSK LQGSLQDMLWQLDLSPGC NVIQISNDLENLR QKVTGLDFIPGLHPILTLSK	LEP_HUMAN_UPS	P41159ups
PROTEIN	17	SUMO1_HUMAN_UPS	1.0000	17	9	1	AEISMLEGAVLDIR DFETLKVDFLSK FLFEGQR IAYSKDFETLKVDFLSK IEAIPQIDKYLK LLLEYLEEK LLLEYLEEKYEEHLYER MSPILGYWK RIEAIPQIDKYLK	SUMO1_HUMAN_UPS	P63165ups
PROTEIN	18	RASH_HUMAN_UPS	0.9975	6	1	1	SFEDIHQYREQIK	RASH_HUMAN_UPS	P01112ups
PROTEIN	19	BID_HUMAN_UPS	0.9975	3	1	1	NRDLATALEQLLQAYPRDMEK	BID_HUMAN_UPS	P55957ups
PROTEIN	20	HBB_HUMAN_UPS	1.0000	36	8	1	EFTPPVQAAYQK GTFATLSELHCDK KVLGAFSDGLAHLDNLK LLGNVLVCVLAHHFGK LLVVYPWTQR SAVTALWGK VNVDEVGGEALGR VVAGVANALAHK	HBB_HUMAN_UPS	P68871ups
PROTEIN	21	UB2E1_HUMAN_UPS	1.0000	3	2	1	ASTSSSSSSSSNQQTEKETNTPKK TRIYHCNINSQGVICLDILK	UB2E1_HUMAN_UPS	P51965ups
PROTEIN	22	LALBA_HUMAN_UPS	0.9221	1	1	1	ALCTEKLEQWLCEK	LALBA_HUMAN_UPS	P00709ups
PROTEIN	23	TRFL_HUMAN_UPS	0.9975	1	2	1	CNQWSGLSEGSVTCSSASTTEDCIALVLK TTYEKYLGPQYVAGITNLKK	TRFL_HUMAN_UPS	P02788ups
PROTEIN	24	shuff1_SYUG_HUMAN_UPS	0.9975	1	1	1	TKMAVGVPPEKSVGDEAFTHGR	shuff1_SYUG_HUMAN_UPS	O76070ups
PROTEIN	25	CAH1_HUMAN_UPS	1.0000	219	13	1	ADGLAVIGVLMK EIINVGHSFHVNFEDNDNR EIINVGHSFHVNFEDNDNRSVLK ESISVSSEQLAQFR HDTSLKPISVSYNPATAK LFQFHFHWGSTNEHGSEHTVDGVK LYPIANGNNQSPVDIK LYPIANGNNQSPVDIKTSETK SLLSNVEGDNAVPMQHNNR SLLSNVEGDNAVPMQHNNRPTQPLK SLLSNVEGDNAVPMQHNNRPTQPLKGR TSETKHDTSLKPISVSYNPATAK YSSLAEAASK	CAH1_HUMAN_UPS	P00915ups
PROTEIN	26	SYHC_HUMAN_UPS	1.0000	10	6	1	HGAEVIDTPVFELK ILDGMFAICGVSDSK IMCEILSSLQIGDFLVK LVSELWDAGIKAELLYK YDLTVPFAR YGEDSKLIYDLKDQGGELLSLR	SYHC_HUMAN_UPS	P12081ups
PROTEIN	27	CYB5_HUMAN_UPS	0.9185	2	2	1	EMSKTFIIGELHPDDRPK YYTLEEIQK	CYB5_HUMAN_UPS	P00167ups
PROTEIN	28	CATG_HUMAN_UPS	0.5769	1	1	1	PHSRPYMAYLQIQSPAGQSR	CATG_HUMAN_UPS	P08311ups
PROTEIN	29	shuff1_ALBU_HUMAN_UPS	0.9975	4	1	1	LCMLDHLETLVVGYVAHK	shuff1_ALBU_HUMAN_UPS	P02768ups
PROTEIN	30	shuff1_TRFL_HUMAN_UPS	0.6475	1	1	1	EGIGSVKLVLEKPR	shuff1_TRFL_HUMAN_UPS	P02788ups
PROTEIN	31	NQO2_HUMAN_UPS	0.9996	2	2	1	LQTIWKEEPIPCTAHWHFGQ VLAPQISFAPEIASEEER	NQO2_HUMAN_UPS	P16083ups
PROTEIN	32	PRDX1_HUMAN_UPS	1.0000	55	13	1	ATAVMPDGQFKDISLSDYKGK GLFIIDDK GLFIIDDKGILR KLNCQVIGASVDSHFCHLAWVNTPK KLNCQVIGASVDSHFCHLAWVNTPKK KQGGLGPMNIPLVSDPK LNCQVIGASVDSHFCHLAWVNTPKK LVQAFQFTDK QGGLGPMNIPLVSDPK QGGLGPMNIPLVSDPKR QITVNDLPVGR TIAQDYGVLK TIAQDYGVLKADEGISFR	PRDX1_HUMAN_UPS	Q06830ups
PROTEIN	33	shuff1_UBE2C_HUMAN_UPS	0.9910	2	2	1	AEEASYMIVLPSTYGHQLASFMVKQDR PTLGQTPSLDGAEAAGTKYGPNHK	shuff1_UBE2C_HUMAN_UPS	O00762ups
PROTEIN	34	CATA_HUMAN_UPS	1.0000	73	17	1	AAQKADVLTTGAGNPVGDKLNVITVGPR ADVLTTGAGNPVGDKLNVITVGPR AFYVNVLNEEQR DPILFPSFIHSQK FNTANDDNVTQVR GAGAFGYFEVTHDITK GPLLVQDVVFTDEMAHFDR GPLLVQDVVFTDEMAHFDRER GPLLVQDVVFTDEMAHFDRERIPER LCENIAGHLKDAQIFIQK LCENIAGHLKDAQIFIQKK LGPNYLHIPVNCPYR LSQEDPDYGIR LVNANGEAVYCK NAIHTFVQSGSHLAAR NFTEVHPDYGSHIQALLDK NFTEVHPDYGSHIQALLDKYNAEKPK	CATA_HUMAN_UPS	P04040ups
PROTEIN	35	UBIQ_HUMAN_UPS	1.0000	14	2	1	TITLEVEPSDTIENVKAK TLSDYNIQKESTLHLVLR	UBIQ_HUMAN_UPS	P62988ups
PROTEIN	36	shuff1_TNFA_HUMAN_UPS	0.5182	1	1	1	CPTGLNDGVALIAGYSQHIAACVELAK	shuff1_TNFA_HUMAN_UPS	P01375ups
PROTEIN	37	ALBU_HUMAN_UPS	1.0000	668	36	1	AACLLPK ADDKETCFAEEGKK AEFAEVSKLVTDLTK ALVLIAFAQYLQQCPFEDHVK AVMDDFAAFVEK CCTESLVNR CCTESLVNRRPCFSALEVDETYVPK HPDYSVVLLLR HPYFYAPELLFFAK HPYFYAPELLFFAKR KLVAASQAALGL KQTALVELVK LKECCEKPLLEK LVAASQAALGL LVNEVTEFAK LVRPEVDVMCTAFHDNEETFLK LVRPEVDVMCTAFHDNEETFLKK MPCAEDYLSVVLNQLCVLHEK PCFSALEVDETYVPK PLVEEPQNLIK QNCELFEQLGEYK QNCELFEQLGEYKFQNALLVR QTALVELVK RHPDYSVVLLLR RHPYFYAPELLFFAK RMPCAEDYLSVVLNQLCVLHEK RPCFSALEVDETYVPK SLHTLFGDK SLHTLFGDKLCTVATLR VFDEFKPLVEEPQNLIK VPQVSTPTLVEVSR YKAAFTECCQAADK YKAAFTECCQAADKAACLLPK YLYEIAR YLYEIARR YTKKVPQVSTPTLVEVSR	ALBU_HUMAN_UPS	P02768ups
PROTEIN	38	shuff1_SYHC_HUMAN_UPS	0.9972	1	1	1	GDDLDCTRESIISLLYGEEEDK	shuff1_SYHC_HUMAN_UPS	P12081ups