#FILE	./MSups_1ul.prot.xml
#PROTEIN	Number	Name	Probability	Total peptide counts	Unique peptides	No. indistinguishable proteins	Peptides	Degenerate Proteins	Annotation
# DATABASE	/project/marcotte/marcotte/ms/database/ms_ups2_sp_CON_shuff.fasta
# CUTOFF	PROBABILITY	0.00	FPR	0.083
# CUTOFF	PROBABILITY	0.10	FPR	0.053
# CUTOFF	PROBABILITY	0.20	FPR	0.053
# CUTOFF	PROBABILITY	0.30	FPR	0.053
# CUTOFF	PROBABILITY	0.40	FPR	0.053
# CUTOFF	PROBABILITY	0.50	FPR	0.036
# CUTOFF	PROBABILITY	0.60	FPR	0.036
# CUTOFF	PROBABILITY	0.70	FPR	0.036
# CUTOFF	PROBABILITY	0.80	FPR	0.036
# CUTOFF	PROBABILITY	0.90	FPR	0.020
# CUTOFF	PROBABILITY	0.95	FPR	0.004
# CUTOFF	PROBABILITY	0.96	FPR	0.002
# CUTOFF	PROBABILITY	0.97	FPR	0.002
# CUTOFF	PROBABILITY	0.98	FPR	0.001
# CUTOFF	PROBABILITY	0.99	FPR	0.001
# CUTOFF	PROBABILITY	1.00	FPR	0.000
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.50	0.40	0.053	0.036
# PROBABILITY CUT (0.05 FDR)	0.4176
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.50	0.40	0.053	0.036
# PROBABILITY CUT (0.05 FDR)	0.4176
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	819
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	136
# PROTEIN	Number	Name	Probability	Contributing_spectral_counts	All_unique_peptides	No._indistinguishable_proteins	Peptides	Degenerate Proteins	Annotation
#	PEPTIDE	Protein_Name	PeptideSequence_Charge	Degenerate?	Spectral counts	Contributing?	Adjusted NPS prob	Weight_(degeneracy)
# DATA
PROTEIN	1	HBB_HUMAN_UPS	1.0000	39	8	1	EFTPPVQAAYQK GTFATLSELHCDK KVLGAFSDGLAHLDNLK LLGNVLVCVLAHHFGK LLVVYPWTQR SAVTALWGK VNVDEVGGEALGR VVAGVANALAHKYH	HBB_HUMAN_UPS	P68871ups
PROTEIN	2	RETBP_HUMAN_UPS	0.9272	4	1	1	FSGTWYAMAK	RETBP_HUMAN_UPS	P02753ups
PROTEIN	3	CO5_HUMAN_UPS	0.9999	31	2	1	AFTECCVVASQLR CIKAFTECCVVASQLR	CO5_HUMAN_UPS	P01031ups
PROTEIN	4	MYG_HUMAN_UPS	1.0000	14	3	1	DMASNYKELGFQG HGATVLTALGGILK HGATVLTALGGILKK	MYG_HUMAN_UPS	P02144ups
PROTEIN	5	EGF_HUMAN_UPS	0.9331	9	1	1	DLKWWELR	EGF_HUMAN_UPS	P01133ups
PROTEIN	6	CAH1_HUMAN_UPS	1.0000	101	13	1	ADGLAVIGVLMK ADGLAVIGVLMKVGEANPK EIINVGHSFHVNFEDNDNRSVLK ESISVSSEQLAQFR GGPFSDSYR HDTSLKPISVSYNPATAK LFQFHFHWGSTNEHGSEHTVDGVK LYPIANGNNQSPVDIK LYPIANGNNQSPVDIKTSETK SLLSNVEGDNAVPMQHNNRPTQPLK SLLSNVEGDNAVPMQHNNRPTQPLKGR TSETKHDTSLKPISVSYNPATAK YSAELHVAHWNSAK	CAH1_HUMAN_UPS	P00915ups
PROTEIN	7	SYHC_HUMAN_UPS	0.9967	5	3	1	ASAELIEEEVAK IFSIVEQR KVPCVGLSIGVER	SYHC_HUMAN_UPS	P12081ups
PROTEIN	8	HBA_HUMAN_UPS	0.9998	13	4	1	FLASVSTVLTSK LRVDPVNFK MFLSFPTTK VGAHAGEYGAEALER	HBA_HUMAN_UPS	P69905ups
PROTEIN	9	CYB5_HUMAN_UPS	0.9315	3	2	1	TFIIGELHPDDRPK YYTLEEIQK	CYB5_HUMAN_UPS	P00167ups
PROTEIN	10	shuff1_LYSC_HUMAN_UPS	0.9974	1	1	1	AAGQDCTLMSNCGINGRYGAYNTGR	shuff1_LYSC_HUMAN_UPS	P61626ups
PROTEIN	11	UBE2C_HUMAN_UPS	0.8322	2	1	1	KYLQETYSKQVTSQEP	UBE2C_HUMAN_UPS	O00762ups
PROTEIN	12	CATG_HUMAN_UPS	0.8149	1	1	1	PHSRPYMAYLQIQSPAGQSR	CATG_HUMAN_UPS	P08311ups
PROTEIN	13	NQO1_HUMAN_UPS	0.9787	4	2	1	IQILEGWK IQILEGWKK	NQO1_HUMAN_UPS	P15559ups
PROTEIN	14	PPIA_HUMAN_UPS	1.0000	19	7	1	FEDENFILK ITIADCGQLE TEWLDGKHVVFGK VKEGMNIVEAMER VSFELFADK VSFELFADKVPK VSFELFADKVPKTAENFR	PPIA_HUMAN_UPS	P62937ups
PROTEIN	15	shuff1_TRFL_HUMAN_UPS	0.4256	1	1	1	EGIGSVKLVLEKPR	shuff1_TRFL_HUMAN_UPS	P02788ups
PROTEIN	16	NQO2_HUMAN_UPS	0.9207	1	1	1	VLAPQISFAPEIASEEER	NQO2_HUMAN_UPS	P16083ups
PROTEIN	17	NEDD8_HUMAN_UPS	0.9019	1	1	1	EIEIDIEPTDKVER	NEDD8_HUMAN_UPS	Q15843ups
PROTEIN	18	shuff1_CATA_HUMAN_UPS	0.9974	1	1	1	AHTDVIFSSVNYSAVLDLGNDAGRE	shuff1_CATA_HUMAN_UPS	P04040ups
PROTEIN	19	PRDX1_HUMAN_UPS	1.0000	26	12	1	GLFIIDDK KLNCQVIGASVDSHFCHLAWVNTPK KLNCQVIGASVDSHFCHLAWVNTPKK KQGGLGPMNIPLVSDPK KQGGLGPMNIPLVSDPKR LNCQVIGASVDSHFCHLAWVNTPKK LVQAFQFTDK QGGLGPMNIPLVSDPK QGGLGPMNIPLVSDPKR QITVNDLPVGR TIAQDYGVLK TIAQDYGVLKADEGISFR	PRDX1_HUMAN_UPS	Q06830ups
PROTEIN	20	LYSC_HUMAN_UPS	0.9232	1	1	1	STDYGIFQINSR	LYSC_HUMAN_UPS	P61626ups
PROTEIN	21	CATA_HUMAN_UPS	1.0000	27	14	1	AAQKADVLTTGAGNPVGDKLNVITVGPR ADVLTTGAGNPVGDKLNVITVGPR AFYVNVLNEEQR DLFNAIATGK DPILFPSFIHSQKR DYPLIPVGK FSTVAGESGSADTVRDPR GAGAFGYFEVTHDITK LCENIAGHLKDAQIFIQK LCENIAGHLKDAQIFIQKK LGPNYLHIPVNCPYR LSQEDPDYGIR NAIHTFVQSGSHLAAR NFTEVHPDYGSHIQALLDK	CATA_HUMAN_UPS	P04040ups
PROTEIN	22	CRP_HUMAN_UPS	0.9572	1	1	1	GYSIFSYATKRQDNEILIFWSK	CRP_HUMAN_UPS	P02741ups
PROTEIN	23	UBC9_HUMAN_UPS	0.8161	1	2	1	GTPWEGGLFK MLFKDDYPSSPPK	UBC9_HUMAN_UPS	P63279ups
PROTEIN	24	UBIQ_HUMAN_UPS	0.9960	4	3	1	QLEDGRTLSDYNIQK TITLEVEPSDTIENVKAK TLSDYNIQKESTLHLVLR	UBIQ_HUMAN_UPS	P62988ups
PROTEIN	25	KCRM_HUMAN_UPS	1.0000	9	6	1	ELFDPIISDR FKLNYKPEEEYPDLSK LNYKPEEEYPDLSK LSVEALNSLTGEFK SFLVWVNEEDHLR VLTLELYK	KCRM_HUMAN_UPS	P06732ups
PROTEIN	26	CAH2_HUMAN_UPS	1.0000	86	7	1	AVQQPDGLAVLGIFLK EPISVSSEQVLK QSPVDIDTHTAK SADFTNFDPR YAAELHLVHWNTK YAAELHLVHWNTKYGDFGK YDPSLKPLSVSYDQATSLR	CAH2_HUMAN_UPS	P00918ups
PROTEIN	27	LEP_HUMAN_UPS	1.0000	39	3	1	DLLHVLAFSK NVIQISNDLENLR QKVTGLDFIPGLHPILTLSK	LEP_HUMAN_UPS	P41159ups
PROTEIN	28	SUMO1_HUMAN_UPS	1.0000	14	7	1	AEISMLEGAVLDIR ERAEISMLEGAVLDIR FLFEGQR IAYSKDFETLK IAYSKDFETLKVDFLSK LTQSMAIIR MSPILGYWK	SUMO1_HUMAN_UPS	P63165ups
PROTEIN	29	GELS_HUMAN_UPS	0.9974	2	1	1	EPAHLMSLFGGKPMIIYKGGTSR	GELS_HUMAN_UPS	P06396ups
PROTEIN	30	shuff1_TNFA_HUMAN_UPS	0.9972	1	1	1	DQLAPFEVTVVEGPLSAAEFSYSVK	shuff1_TNFA_HUMAN_UPS	P01375ups
PROTEIN	31	ALBU_HUMAN_UPS	1.0000	358	24	1	AACLLPK AEFAEVSKLVTDLTK AVMDDFAAFVEK CCTESLVNR HPDYSVVLLLR KLVAASQAALGL KQTALVELVK LKECCEKPLLEK LVAASQAALGL LVNEVTEFAK LVRPEVDVMCTAFHDNEETFLKK PCFSALEVDETYVPK QNCELFEQLGEYK QTALVELVK RHPDYSVVLLLR RPCFSALEVDETYVPK SLHTLFGDK SLHTLFGDKLCTVATLR TYETTLEKCCAAADPHECYAK VFDEFKPLVEEPQNLIK VPQVSTPTLVEVSR YKAAFTECCQAADKAACLLPK YLYEIAR YTKKVPQVSTPTLVEVSR	ALBU_HUMAN_UPS	P02768ups