#FILE	./MSups_15ul.prot.xml
#PROTEIN	Number	Name	Probability	Total peptide counts	Unique peptides	No. indistinguishable proteins	Peptides	Degenerate Proteins	Annotation
# DATABASE	/project/marcotte/marcotte/ms/database/ms_ups2_sp_CON_shuff.fasta
# CUTOFF	PROBABILITY	0.00	FPR	0.184
# CUTOFF	PROBABILITY	0.10	FPR	0.070
# CUTOFF	PROBABILITY	0.20	FPR	0.070
# CUTOFF	PROBABILITY	0.30	FPR	0.053
# CUTOFF	PROBABILITY	0.40	FPR	0.024
# CUTOFF	PROBABILITY	0.50	FPR	0.024
# CUTOFF	PROBABILITY	0.60	FPR	0.024
# CUTOFF	PROBABILITY	0.70	FPR	0.015
# CUTOFF	PROBABILITY	0.80	FPR	0.002
# CUTOFF	PROBABILITY	0.90	FPR	0.002
# CUTOFF	PROBABILITY	0.95	FPR	0.002
# CUTOFF	PROBABILITY	0.96	FPR	0.002
# CUTOFF	PROBABILITY	0.97	FPR	0.002
# CUTOFF	PROBABILITY	0.98	FPR	0.002
# CUTOFF	PROBABILITY	0.99	FPR	0.001
# CUTOFF	PROBABILITY	1.00	FPR	0.000
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.40	0.30	0.053	0.024
# PROBABILITY CUT (0.05 FDR)	0.3103
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.40	0.30	0.053	0.024
# PROBABILITY CUT (0.05 FDR)	0.3103
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	1847
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	204
# PROTEIN	Number	Name	Probability	Contributing_spectral_counts	All_unique_peptides	No._indistinguishable_proteins	Peptides	Degenerate Proteins	Annotation
#	PEPTIDE	Protein_Name	PeptideSequence_Charge	Degenerate?	Spectral counts	Contributing?	Adjusted NPS prob	Weight_(degeneracy)
# DATA
PROTEIN	1	GSTP1_HUMAN_UPS	1.0000	2	2	1	AFLASPEYVNLPINGNGKQ YISLIYTNYEAGKDDYVK	GSTP1_HUMAN_UPS	P09211ups
PROTEIN	2	RETBP_HUMAN_UPS	0.7939	2	2	1	FSGTWYAMAK YWGVASFLQK	RETBP_HUMAN_UPS	P02753ups
PROTEIN	3	CO5_HUMAN_UPS	0.9999	40	2	1	AFTECCVVASQLR CIKAFTECCVVASQLR	CO5_HUMAN_UPS	P01031ups
PROTEIN	4	MYG_HUMAN_UPS	1.0000	23	4	1	DMASNYKELGFQG HGATVLTALGGILK HGATVLTALGGILKK VEADIPGHGQEVLIRLFKGHPETLEK	MYG_HUMAN_UPS	P02144ups
PROTEIN	5	EGF_HUMAN_UPS	0.9802	15	1	1	DLKWWELR	EGF_HUMAN_UPS	P01133ups
PROTEIN	6	PDGFB_HUMAN_UPS	0.9976	2	1	1	ATVTLEDHLACKCETVAAARPVT	PDGFB_HUMAN_UPS	P01127ups
PROTEIN	7	HBA_HUMAN_UPS	1.0000	27	4	1	FLASVSTVLTSK MFLSFPTTK VADALTNAVAHVDDMPNALSALSDLHAHK VGAHAGEYGAEALER	HBA_HUMAN_UPS	P69905ups
PROTEIN	8	TRFE_HUMAN_UPS	1.0000	2	3	1	DLLFRDDTVCLAK NTYEKYLGEEYVKAVGNLR PVVAEFYGSKEDPQTFYYAVAVVKK	TRFE_HUMAN_UPS	P02787ups
PROTEIN	9	UBE2C_HUMAN_UPS	1.0000	5	2	1	FLTPCYHPNVDTQGNICLDILK KYLQETYSKQVTSQEP	UBE2C_HUMAN_UPS	O00762ups
PROTEIN	10	PPIA_HUMAN_UPS	1.0000	43	7	1	EGMNIVEAMER FEDENFILK IIPGFMCQGGDFTR TEWLDGKHVVFGK VKEGMNIVEAMER VSFELFADKVPK VSFELFADKVPKTAENFR	PPIA_HUMAN_UPS	P62937ups
PROTEIN	11	shuff1_UB2E1_HUMAN_UPS	0.9976	1	1	1	TSDYTSSPVRGSVSGLPQGR	shuff1_UB2E1_HUMAN_UPS	P51965ups
PROTEIN	12	shuff1_CATA_HUMAN_UPS	0.9994	4	3	1	AHTDVIFSSVNYSAVLDLGNDAGRE TEHHSNTTYAFKNRR VINPGKIIFTDAEEATR	shuff1_CATA_HUMAN_UPS	P04040ups
PROTEIN	13	shuff1_NQO1_HUMAN_UPS	0.9976	1	2	1	AESDRSFQLLSLPDPMEFNFPSKEK MKAESDRSFQLLSLPDPMEFNFPSK	shuff1_NQO1_HUMAN_UPS	P15559ups
PROTEIN	14	CRP_HUMAN_UPS	0.7222	1	1	1	KAFVFPKESDTSYVSLK	CRP_HUMAN_UPS	P02741ups
PROTEIN	15	shuff1_NQO2_HUMAN_UPS	0.9876	1	1	1	HWADAAQEDFTKKEDIENFQITAK	shuff1_NQO2_HUMAN_UPS	P16083ups
PROTEIN	16	UBC9_HUMAN_UPS	0.9882	3	3	1	DHPFGFVAVPTK GTPWEGGLFK MLFKDDYPSSPPK	UBC9_HUMAN_UPS	P63279ups
PROTEIN	17	shuff1_PRDX1_HUMAN_UPS	0.9976	1	1	1	GAMLPTVDSTTLSQFFIIFAK	shuff1_PRDX1_HUMAN_UPS	Q06830ups
PROTEIN	18	CAH2_HUMAN_UPS	1.0000	243	12	1	AVQQPDGLAVLGIFLK EPISVSSEQVLK GGPLDGTYR HNGPEHWHKDFPIAKGER KYAAELHLVHWNTKYGDFGK LIQFHFHWGSLDGQGSEHTVDKK QSPVDIDTHTAK QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR SADFTNFDPR YAAELHLVHWNTK YAAELHLVHWNTKYGDFGK YDPSLKPLSVSYDQATSLR	CAH2_HUMAN_UPS	P00918ups
PROTEIN	19	KCRM_HUMAN_UPS	1.0000	18	7	1	FKLNYKPEEEYPDLSK LNYKPEEEYPDLSK LSVEALNSLTGEFK LSVEALNSLTGEFKGK PVSPLLLASGMARDWPDAR SFLVWVNEEDHLR VLTLELYK	KCRM_HUMAN_UPS	P06732ups
PROTEIN	20	LEP_HUMAN_UPS	1.0000	146	4	1	DLLHVLAFSK INDISHTQSVSSK NVIQISNDLENLR QKVTGLDFIPGLHPILTLSK	LEP_HUMAN_UPS	P41159ups
PROTEIN	21	SUMO1_HUMAN_UPS	1.0000	20	9	1	AEISMLEGAVLDIR DFETLKVDFLSK ERAEISMLEGAVLDIR IAYSKDFETLKVDFLSK IEAIPQIDKYLK LLLEYLEEK LLLEYLEEKYEEHLYER MSPILGYWK RIEAIPQIDKYLK	SUMO1_HUMAN_UPS	P63165ups
PROTEIN	22	RASH_HUMAN_UPS	0.9976	4	1	1	SFEDIHQYREQIK	RASH_HUMAN_UPS	P01112ups
PROTEIN	23	BID_HUMAN_UPS	0.9976	5	1	1	NRDLATALEQLLQAYPRDMEK	BID_HUMAN_UPS	P55957ups
PROTEIN	24	HBB_HUMAN_UPS	1.0000	42	8	1	EFTPPVQAAYQK GTFATLSELHCDK KVLGAFSDGLAHLDNLK LLGNVLVCVLAHHFGK LLVVYPWTQR SAVTALWGK VNVDEVGGEALGR VVAGVANALAHK	HBB_HUMAN_UPS	P68871ups
PROTEIN	25	UB2E1_HUMAN_UPS	0.9976	3	1	1	ASTSSSSSSSSNQQTEKETNTPKK	UB2E1_HUMAN_UPS	P51965ups
PROTEIN	26	CYC_HUMAN_UPS	0.6298	3	1	1	IFIMKCSQCHTVEK	CYC_HUMAN_UPS	P99999ups
PROTEIN	27	CAH1_HUMAN_UPS	1.0000	262	15	1	ADGLAVIGVLMK EIINVGHSFHVNFEDNDNR EIINVGHSFHVNFEDNDNRSVLK ESISVSSEQLAQFR GGPFSDSYR HDTSLKPISVSYNPATAK LFQFHFHWGSTNEHGSEHTVDGVK LYPIANGNNQSPVDIK LYPIANGNNQSPVDIKTSETK SLLSNVEGDNAVPMQHNNR SLLSNVEGDNAVPMQHNNRPTQPLK SLLSNVEGDNAVPMQHNNRPTQPLKGR TSETKHDTSLKPISVSYNPATAK YSAELHVAHWNSAK YSSLAEAASK	CAH1_HUMAN_UPS	P00915ups
PROTEIN	28	SYHC_HUMAN_UPS	1.0000	9	4	1	EEVDVRREDLVEEIK HGAEVIDTPVFELK ILDGMFAICGVSDSK YDLTVPFAR	SYHC_HUMAN_UPS	P12081ups
PROTEIN	29	shuff1_LYSC_HUMAN_UPS	0.3405	1	1	1	VVHEWVKANRQQILNVK	shuff1_LYSC_HUMAN_UPS	P61626ups
PROTEIN	30	CYB5_HUMAN_UPS	1.0000	3	2	1	EMSKTFIIGELHPDDRPK TFIIGELHPDDRPK	CYB5_HUMAN_UPS	P00167ups
PROTEIN	31	CATG_HUMAN_UPS	0.9971	1	1	1	PHSRPYMAYLQIQSPAGQSR	CATG_HUMAN_UPS	P08311ups
PROTEIN	32	shuff1_TRFL_HUMAN_UPS	0.9997	5	3	1	EGIGSVKLVLEKPR KTDLDNLDVADSCLLSKFPR TYVSPNTWALECVDVPSGQPARFSIR	shuff1_TRFL_HUMAN_UPS	P02788ups
PROTEIN	33	NQO2_HUMAN_UPS	1.0000	4	3	1	GMVAAWSQRLQTIWK LQTIWKEEPIPCTAHWHFGQ VLAPQISFAPEIASEEER	NQO2_HUMAN_UPS	P16083ups
PROTEIN	34	shuff1_THIO_HUMAN_UPS	0.9985	2	2	1	QQNAAFNEKLK QQNAAFNEKLKSVEHDVVK	shuff1_THIO_HUMAN_UPS	P10599ups
PROTEIN	35	shuff1_SODC_HUMAN_UPS	0.9794	1	1	1	AVNGVDTKGIGCAGLVPTHGGFVGNAAGSK	shuff1_SODC_HUMAN_UPS	P00441ups
PROTEIN	36	PRDX1_HUMAN_UPS	1.0000	48	13	1	ATAVMPDGQFK ATAVMPDGQFKDISLSDYKGK GLFIIDDK KLNCQVIGASVDSHFCHLAWVNTPK KLNCQVIGASVDSHFCHLAWVNTPKK KQGGLGPMNIPLVSDPK KQGGLGPMNIPLVSDPKR LNCQVIGASVDSHFCHLAWVNTPKK LVQAFQFTDK QGGLGPMNIPLVSDPK QGGLGPMNIPLVSDPKR QITVNDLPVGR TIAQDYGVLKADEGISFR	PRDX1_HUMAN_UPS	Q06830ups
PROTEIN	37	shuff1_UBE2C_HUMAN_UPS	0.9981	2	1	1	QDRHQWPGIVGFGKHSLCPLSAK	shuff1_UBE2C_HUMAN_UPS	O00762ups
PROTEIN	38	CATA_HUMAN_UPS	1.0000	70	21	1	AAQKADVLTTGAGNPVGDKLNVITVGPR ADVLTTGAGNPVGDKLNVITVGPR AFYVNVLNEEQR AFYVNVLNEEQRK DAQIFIQK DPILFPSFIHSQK DPILFPSFIHSQKR FNTANDDNVTQVR GAGAFGYFEVTHDITK GAGAFGYFEVTHDITKYSK GPLLVQDVVFTDEMAHFDR GPLLVQDVVFTDEMAHFDRER LCENIAGHLKDAQIFIQK LCENIAGHLKDAQIFIQKK LFAYPDTHR LGPNYLHIPVNCPYR LSQEDPDYGIR LVNANGEAVYCK NAIHTFVQSGSHLAAR NFTEVHPDYGSHIQALLDK NFTEVHPDYGSHIQALLDKYNAEKPK	CATA_HUMAN_UPS	P04040ups
PROTEIN	39	UBIQ_HUMAN_UPS	1.0000	17	4	1	QLEDGRTLSDYNIQKESTLHLVLR TITLEVEPSDTIENVKAK TLSDYNIQK TLSDYNIQKESTLHLVLR	UBIQ_HUMAN_UPS	P62988ups
PROTEIN	40	GELS_HUMAN_UPS	1.0000	6	2	1	DPDQTDGLGLSYLSSHIANVER EPAHLMSLFGGKPMIIYKGGTSR	GELS_HUMAN_UPS	P06396ups
PROTEIN	41	ALBU_HUMAN_UPS	1.0000	757	39	1	AACLLPK ADDKETCFAEEGKK AEFAEVSKLVTDLTK AVMDDFAAFVEK CCAAADPHECYAK CCTESLVNR CCTESLVNRRPCFSALEVDETYVPK DDNPNLPR EQLKAVMDDFAAFVEK HPDYSVVLLLR HPYFYAPELLFFAK HPYFYAPELLFFAKR KLVAASQAALGL KQTALVELVK LCTVATLR LDELRDEGK LKECCEKPLLEK LSQRFPK LVAASQAALGL LVNEVTEFAK LVRPEVDVMCTAFHDNEETFLK LVRPEVDVMCTAFHDNEETFLKK PCFSALEVDETYVPK PLVEEPQNLIK QNCELFEQLGEYK QNCELFEQLGEYKFQNALLVR QTALVELVK RHPDYSVVLLLR RHPYFYAPELLFFAK RHPYFYAPELLFFAKR RPCFSALEVDETYVPK SLHTLFGDK SLHTLFGDKLCTVATLR VFDEFKPLVEEPQNLIK VPQVSTPTLVEVSR YKAAFTECCQAADK YKAAFTECCQAADKAACLLPK YLYEIAR YTKKVPQVSTPTLVEVSR	ALBU_HUMAN_UPS	P02768ups
PROTEIN	42	shuff1_SYHC_HUMAN_UPS	0.3780	1	1	1	YVVSRALEITTTK	shuff1_SYHC_HUMAN_UPS	P12081ups