#FILE ./MSups_5ul_b.prot.xml #FILE ./MSups_5ul_b.prot.xml # DATABASE /project/marcotte/marcotte/ms/database/ms_ups2_sp_CON_shuff.fasta # CUTOFF PROBABILITY 0.00 FPR 0.165 # CUTOFF PROBABILITY 0.10 FPR 0.116 # CUTOFF PROBABILITY 0.20 FPR 0.116 # CUTOFF PROBABILITY 0.30 FPR 0.076 # CUTOFF PROBABILITY 0.40 FPR 0.057 # CUTOFF PROBABILITY 0.50 FPR 0.041 # CUTOFF PROBABILITY 0.60 FPR 0.041 # CUTOFF PROBABILITY 0.70 FPR 0.031 # CUTOFF PROBABILITY 0.80 FPR 0.024 # CUTOFF PROBABILITY 0.90 FPR 0.005 # CUTOFF PROBABILITY 0.95 FPR 0.002 # CUTOFF PROBABILITY 0.96 FPR 0.002 # CUTOFF PROBABILITY 0.97 FPR 0.001 # CUTOFF PROBABILITY 0.98 FPR 0.001 # CUTOFF PROBABILITY 0.99 FPR 0.001 # CUTOFF PROBABILITY 1.00 FPR 0.000 # UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR 0.50 0.40 0.057 0.041 # PROBABILITY CUT (0.05 FDR) 0.4437 # UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR 0.50 0.40 0.057 0.041 # PROBABILITY CUT (0.05 FDR) 0.4437 # TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS 1604 # TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS 185 # PROTEIN Number Name Probability Contributing_spectral_counts All_unique_peptides No._indistinguishable_proteins Peptides Degenerate Proteins Annotation # PEPTIDE Protein_Name PeptideSequence_Charge Degenerate? Spectral counts Contributing? Neutral_mass(check) Adjusted NPS prob Weight_(degeneracy) # DATA PROTEIN 1 GSTA1_HUMAN_UPS 0.3394 1 1 1 VLKSHGQDYLVGNKLSR GSTA1_HUMAN_UPS P08263ups PEPTIDE GSTA1_HUMAN_UPS VLKSHGQDYLVGNKLSR_4 Y 1 Y 1913.0483 0.3394 1.00 PROTEIN 2 RETBP_HUMAN_UPS 0.8530 6 1 1 FSGTWYAMAK RETBP_HUMAN_UPS P02753ups PEPTIDE RETBP_HUMAN_UPS FSGTWYAMAK_2 Y 6 Y 1160.5325 0.8530 1.00 PROTEIN 3 CO5_HUMAN_UPS 1.0000 35 2 1 AFTECCVVASQLR CIKAFTECCVVASQLR CO5_HUMAN_UPS P01031ups PEPTIDE CO5_HUMAN_UPS AFTECCVVASQLR_2 Y 30 Y 1539.7175 0.9984 1.00 PEPTIDE CO5_HUMAN_UPS AFTECCVVASQLR_3 Y 3 Y 1539.7175 0.9423 1.00 PEPTIDE CO5_HUMAN_UPS CIKAFTECCVVASQLR_3 Y 2 Y 1940.9272 0.9581 1.00 PROTEIN 4 MYG_HUMAN_UPS 1.0000 14 4 1 DMASNYKELGFQG HGATVLTALGGILK HGATVLTALGGILKK VEADIPGHGQEVLIRLFKGHPETLEK MYG_HUMAN_UPS P02144ups PEPTIDE MYG_HUMAN_UPS DMASNYKELGFQG_2 Y 4 Y 1458.6449 0.9984 1.00 PEPTIDE MYG_HUMAN_UPS HGATVLTALGGILKK_3 Y 2 Y 1477.8980 0.9984 1.00 PEPTIDE MYG_HUMAN_UPS HGATVLTALGGILK_2 Y 2 Y 1349.8031 0.9520 1.00 PEPTIDE MYG_HUMAN_UPS HGATVLTALGGILK_3 Y 4 Y 1349.8031 0.9390 1.00 PEPTIDE MYG_HUMAN_UPS VEADIPGHGQEVLIRLFKGHPETLEK_4 Y 2 Y 2911.5556 0.9984 1.00 PROTEIN 5 EGF_HUMAN_UPS 0.9423 12 1 1 DLKWWELR EGF_HUMAN_UPS P01133ups PEPTIDE EGF_HUMAN_UPS DLKWWELR_2 Y 8 Y 1144.6029 0.4840 1.00 PEPTIDE EGF_HUMAN_UPS DLKWWELR_3 Y 4 Y 1144.6029 0.8881 1.00 PROTEIN 6 HBA_HUMAN_UPS 1.0000 21 4 1 FLASVSTVLTSK MFLSFPTTK VADALTNAVAHVDDMPNALSALSDLHAHK VGAHAGEYGAEALER HBA_HUMAN_UPS P69905ups PEPTIDE HBA_HUMAN_UPS FLASVSTVLTSK_2 Y 4 Y 1251.7075 0.9507 1.00 PEPTIDE HBA_HUMAN_UPS MFLSFPTTK_2 Y 9 Y 1070.5471 0.9537 1.00 PEPTIDE HBA_HUMAN_UPS VADALTNAVAHVDDMPNALSALSDLHAHK_4 Y 2 Y 2995.4822 0.9984 1.00 PEPTIDE HBA_HUMAN_UPS VADALTNAVAHVDDMPNALSALSDLHAHK_5 Y 1 Y 2995.4822 0.9984 1.00 PEPTIDE HBA_HUMAN_UPS VGAHAGEYGAEALER_3 Y 5 Y 1528.7270 0.9229 1.00 PROTEIN 7 TRFE_HUMAN_UPS 0.9686 1 1 1 PVVAEFYGSKEDPQTFYYAVAVVKK TRFE_HUMAN_UPS P02787ups PEPTIDE TRFE_HUMAN_UPS PVVAEFYGSKEDPQTFYYAVAVVKK_5 Y 1 Y 2834.4531 0.9686 1.00 PROTEIN 8 NQO1_HUMAN_UPS 0.9978 5 2 1 IQILEGWK IQILEGWKK NQO1_HUMAN_UPS P15559ups PEPTIDE NQO1_HUMAN_UPS IQILEGWKK_2 Y 1 Y 1113.6546 0.5342 1.00 PEPTIDE NQO1_HUMAN_UPS IQILEGWKK_3 Y 2 Y 1113.6546 0.9702 1.00 PEPTIDE NQO1_HUMAN_UPS IQILEGWK_2 Y 2 Y 985.5597 0.8410 1.00 PROTEIN 9 PPIA_HUMAN_UPS 1.0000 38 10 1 EGMNIVEAMER FEDENFILK IIPGFMCQGGDFTR IIPGFMCQGGDFTRHNGTGGK ITIADCGQLE KITIADCGQLE TEWLDGKHVVFGK VKEGMNIVEAMER VSFELFADK VSFELFADKVPK PPIA_HUMAN_UPS P62937ups PEPTIDE PPIA_HUMAN_UPS EGMNIVEAMER_2 Y 1 Y 1277.5744 0.9152 1.00 PEPTIDE PPIA_HUMAN_UPS FEDENFILK_2 Y 7 Y 1153.5655 0.9484 1.00 PEPTIDE PPIA_HUMAN_UPS IIPGFMCQGGDFTRHNGTGGK_5 Y 1 N 2249.0470 0.0439 1.00 PEPTIDE PPIA_HUMAN_UPS IIPGFMCQGGDFTR_2 Y 2 Y 1597.7382 0.9547 1.00 PEPTIDE PPIA_HUMAN_UPS ITIADCGQLE_2 Y 6 Y 1118.5278 0.8177 1.00 PEPTIDE PPIA_HUMAN_UPS KITIADCGQLE_2 Y 2 Y 1246.6228 0.2347 1.00 PEPTIDE PPIA_HUMAN_UPS TEWLDGKHVVFGK_3 Y 2 Y 1514.7882 0.9700 1.00 PEPTIDE PPIA_HUMAN_UPS VKEGMNIVEAMER_2 Y 3 Y 1504.7378 0.9984 1.00 PEPTIDE PPIA_HUMAN_UPS VKEGMNIVEAMER_3 Y 4 Y 1504.7378 0.8173 1.00 PEPTIDE PPIA_HUMAN_UPS VSFELFADKVPK_2 Y 4 Y 1378.7497 0.7444 1.00 PEPTIDE PPIA_HUMAN_UPS VSFELFADKVPK_3 Y 3 Y 1378.7497 0.9504 1.00 PEPTIDE PPIA_HUMAN_UPS VSFELFADK_2 Y 4 Y 1054.5335 0.9538 1.00 PROTEIN 10 shuff1_CRP_HUMAN_UPS 0.0000 0 1 1 YGTLSPVGHNATELDWVATTVGPK shuff1_CRP_HUMAN_UPS P02741ups PEPTIDE shuff1_CRP_HUMAN_UPS YGTLSPVGHNATELDWVATTVGPK_3 Y 2 N 2512.2598 0.1146 1.00 PROTEIN 11 NEDD8_HUMAN_UPS 0.7727 1 1 1 EIEIDIEPTDKVER NEDD8_HUMAN_UPS Q15843ups PEPTIDE NEDD8_HUMAN_UPS EIEIDIEPTDKVER_3 Y 1 Y 1684.8519 0.7727 1.00 PROTEIN 12 shuff1_CATA_HUMAN_UPS 0.6770 1 2 1 AHTDVIFSSVNYSAVLDLGNDAGRE VINPGKIIFTDAEEATR shuff1_CATA_HUMAN_UPS P04040ups PEPTIDE shuff1_CATA_HUMAN_UPS AHTDVIFSSVNYSAVLDLGNDAGRE_3 Y 2 N 2649.2671 0.1892 1.00 PEPTIDE shuff1_CATA_HUMAN_UPS VINPGKIIFTDAEEATR_3 Y 1 Y 1872.9945 0.6770 1.00 PROTEIN 13 shuff1_NQO1_HUMAN_UPS 0.9955 1 1 1 AESDRSFQLLSLPDPMEFNFPSKEK shuff1_NQO1_HUMAN_UPS P15559ups PEPTIDE shuff1_NQO1_HUMAN_UPS AESDRSFQLLSLPDPMEFNFPSKEK_4 Y 1 Y 2911.4062 0.9955 1.00 PROTEIN 14 KCRM_HUMAN_UPS 1.0000 18 10 1 ELFDPIISDR GQSIDDMIPAQK LNYKPEEEYPDLSK LSVEALNSLTGEFK LSVEALNSLTGEFKGK PVSPLLLASGMARDWPDAR RGTGGVDTAAVGSVFDVSNADR SFLVWVNEEDHLR TDLNHENLKGGDDLDPNYVLSSR VLTLELYK KCRM_HUMAN_UPS P06732ups PEPTIDE KCRM_HUMAN_UPS ELFDPIISDR_2 Y 2 N 1203.6136 0.0988 1.00 PEPTIDE KCRM_HUMAN_UPS GQSIDDMIPAQK_2 Y 4 Y 1301.6286 0.9465 1.00 PEPTIDE KCRM_HUMAN_UPS LNYKPEEEYPDLSK_3 Y 4 Y 1723.8305 0.9590 1.00 PEPTIDE KCRM_HUMAN_UPS LSVEALNSLTGEFKGK_3 Y 1 Y 1691.9094 0.8209 1.00 PEPTIDE KCRM_HUMAN_UPS LSVEALNSLTGEFK_2 Y 1 Y 1506.7930 0.9478 1.00 PEPTIDE KCRM_HUMAN_UPS PVSPLLLASGMARDWPDAR_3 Y 1 Y 2051.0622 0.5012 1.00 PEPTIDE KCRM_HUMAN_UPS RGTGGVDTAAVGSVFDVSNADR_3 Y 2 Y 2150.0352 0.9694 1.00 PEPTIDE KCRM_HUMAN_UPS SFLVWVNEEDHLR_2 Y 1 Y 1642.8104 0.7578 1.00 PEPTIDE KCRM_HUMAN_UPS SFLVWVNEEDHLR_3 Y 1 Y 1642.8104 0.9465 1.00 PEPTIDE KCRM_HUMAN_UPS TDLNHENLKGGDDLDPNYVLSSR_4 Y 2 Y 2571.2201 0.9984 1.00 PEPTIDE KCRM_HUMAN_UPS VLTLELYK_2 Y 1 Y 977.5797 0.5694 1.00 PROTEIN 15 CAH2_HUMAN_UPS 1.0000 167 12 1 AVQQPDGLAVLGIFLK EPISVSSEQVLK GGPLDGTYR GKSADFTNFDPR LIQFHFHWGSLDGQGSEHTVDK LIQFHFHWGSLDGQGSEHTVDKK QSPVDIDTHTAK QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR SADFTNFDPR YAAELHLVHWNTK YAAELHLVHWNTKYGDFGK YDPSLKPLSVSYDQATSLR CAH2_HUMAN_UPS P00918ups PEPTIDE CAH2_HUMAN_UPS AVQQPDGLAVLGIFLK_2 Y 20 Y 1667.9610 0.9994 1.00 PEPTIDE CAH2_HUMAN_UPS AVQQPDGLAVLGIFLK_3 Y 3 Y 1667.9610 0.9799 1.00 PEPTIDE CAH2_HUMAN_UPS EPISVSSEQVLK_2 Y 2 Y 1314.7031 0.8196 1.00 PEPTIDE CAH2_HUMAN_UPS GGPLDGTYR_2 Y 4 Y 934.4508 0.9818 1.00 PEPTIDE CAH2_HUMAN_UPS GKSADFTNFDPR_2 Y 1 Y 1353.6313 0.2087 1.00 PEPTIDE CAH2_HUMAN_UPS LIQFHFHWGSLDGQGSEHTVDKK_5 Y 1 Y 2665.3037 0.9989 1.00 PEPTIDE CAH2_HUMAN_UPS LIQFHFHWGSLDGQGSEHTVDK_4 Y 1 Y 2537.2088 0.9994 1.00 PEPTIDE CAH2_HUMAN_UPS QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR_4 Y 2 Y 3431.7209 0.9994 1.00 PEPTIDE CAH2_HUMAN_UPS QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR_5 Y 2 Y 3431.7209 0.9211 1.00 PEPTIDE CAH2_HUMAN_UPS QSPVDIDTHTAK_3 Y 1 Y 1310.6466 0.7708 1.00 PEPTIDE CAH2_HUMAN_UPS SADFTNFDPR_2 Y 55 Y 1168.5149 0.9994 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTKYGDFGK_3 Y 1 Y 2248.1065 0.9880 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTKYGDFGK_4 Y 2 Y 2248.1065 0.9994 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTK_2 Y 2 Y 1580.8100 0.9822 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTK_3 Y 1 Y 1580.8100 0.8816 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTK_4 Y 4 Y 1580.8100 0.9994 1.00 PEPTIDE CAH2_HUMAN_UPS YDPSLKPLSVSYDQATSLR_2 Y 7 Y 2139.0848 0.8840 1.00 PEPTIDE CAH2_HUMAN_UPS YDPSLKPLSVSYDQATSLR_3 Y 58 Y 2139.0848 0.9883 1.00 PROTEIN 16 UBC9_HUMAN_UPS 0.9998 7 3 1 GTPWEGGLFK KDHPFGFVAVPTK MLFKDDYPSSPPK UBC9_HUMAN_UPS P63279ups PEPTIDE UBC9_HUMAN_UPS GTPWEGGLFK_2 Y 2 Y 1090.5447 0.9370 1.00 PEPTIDE UBC9_HUMAN_UPS KDHPFGFVAVPTK_3 Y 2 Y 1441.7718 0.9198 1.00 PEPTIDE UBC9_HUMAN_UPS MLFKDDYPSSPPK_3 Y 3 Y 1523.7330 0.9679 1.00 PROTEIN 17 LEP_HUMAN_UPS 1.0000 114 3 1 DLLHVLAFSK NVIQISNDLENLR QKVTGLDFIPGLHPILTLSK LEP_HUMAN_UPS P41159ups PEPTIDE LEP_HUMAN_UPS DLLHVLAFSK_2 Y 33 Y 1141.6495 0.9549 1.00 PEPTIDE LEP_HUMAN_UPS DLLHVLAFSK_3 Y 16 Y 1141.6495 0.9384 1.00 PEPTIDE LEP_HUMAN_UPS NVIQISNDLENLR_2 Y 55 Y 1526.8053 0.9448 1.00 PEPTIDE LEP_HUMAN_UPS NVIQISNDLENLR_3 Y 1 Y 1526.8053 0.7737 1.00 PEPTIDE LEP_HUMAN_UPS QKVTGLDFIPGLHPILTLSK_3 Y 2 Y 2176.2620 0.9702 1.00 PEPTIDE LEP_HUMAN_UPS QKVTGLDFIPGLHPILTLSK_4 Y 7 Y 2176.2620 0.9984 1.00 PROTEIN 18 SUMO1_HUMAN_UPS 1.0000 28 11 1 AEISMLEGAVLDIR DFETLKVDFLSK ERAEISMLEGAVLDIR FLFEGQR IAYSKDFETLK IAYSKDFETLKVDFLSK IEAIPQIDKYLK LLLEYLEEK LTQSMAIIR MSPILGYWK RIEAIPQIDKYLK SUMO1_HUMAN_UPS P63165ups PEPTIDE SUMO1_HUMAN_UPS AEISMLEGAVLDIR_2 Y 5 Y 1515.7967 0.9538 1.00 PEPTIDE SUMO1_HUMAN_UPS DFETLKVDFLSK_2 Y 1 Y 1440.7500 0.7166 1.00 PEPTIDE SUMO1_HUMAN_UPS ERAEISMLEGAVLDIR_3 Y 2 Y 1800.9404 0.7296 1.00 PEPTIDE SUMO1_HUMAN_UPS FLFEGQR_2 Y 6 Y 895.4552 0.9096 1.00 PEPTIDE SUMO1_HUMAN_UPS IAYSKDFETLKVDFLSK_4 Y 2 Y 2003.0615 0.9984 1.00 PEPTIDE SUMO1_HUMAN_UPS IAYSKDFETLK_3 Y 2 Y 1313.6867 0.4087 1.00 PEPTIDE SUMO1_HUMAN_UPS IEAIPQIDKYLK_3 Y 4 Y 1429.8181 0.8436 1.00 PEPTIDE SUMO1_HUMAN_UPS LLLEYLEEK_2 Y 2 N 1148.6329 0.0996 1.00 PEPTIDE SUMO1_HUMAN_UPS LTQSMAIIR_2 Y 1 N 1031.5798 0.0747 1.00 PEPTIDE SUMO1_HUMAN_UPS MSPILGYWK_2 Y 4 Y 1093.5630 0.9547 1.00 PEPTIDE SUMO1_HUMAN_UPS RIEAIPQIDKYLK_3 Y 2 Y 1585.9192 0.8675 1.00 PROTEIN 19 BID_HUMAN_UPS 0.9955 1 1 1 NRDLATALEQLLQAYPRDMEK BID_HUMAN_UPS P55957ups PEPTIDE BID_HUMAN_UPS NRDLATALEQLLQAYPRDMEK_4 Y 1 Y 2474.2588 0.9955 1.00 PROTEIN 20 HBB_HUMAN_UPS 1.0000 56 9 1 EFTPPVQAAYQK GTFATLSELHCDK KVLGAFSDGLAHLDNLK LLGNVLVCVLAHHFGK LLVVYPWTQR SAVTALWGK VNVDEVGGEALGR VVAGVANALAHK VVAGVANALAHKYH HBB_HUMAN_UPS P68871ups PEPTIDE HBB_HUMAN_UPS EFTPPVQAAYQK_2 Y 10 Y 1377.6929 0.9609 1.00 PEPTIDE HBB_HUMAN_UPS GTFATLSELHCDK_2 Y 3 Y 1477.6872 0.9556 1.00 PEPTIDE HBB_HUMAN_UPS GTFATLSELHCDK_3 Y 2 Y 1477.6872 0.8594 1.00 PEPTIDE HBB_HUMAN_UPS KVLGAFSDGLAHLDNLK_2 Y 1 Y 1796.9785 0.9984 1.00 PEPTIDE HBB_HUMAN_UPS KVLGAFSDGLAHLDNLK_3 Y 11 Y 1796.9785 0.9742 1.00 PEPTIDE HBB_HUMAN_UPS LLGNVLVCVLAHHFGK_3 Y 1 Y 1775.9869 0.5764 1.00 PEPTIDE HBB_HUMAN_UPS LLVVYPWTQR_2 Y 10 Y 1273.7183 0.9609 1.00 PEPTIDE HBB_HUMAN_UPS SAVTALWGK_2 Y 8 Y 931.5127 0.9984 1.00 PEPTIDE HBB_HUMAN_UPS VNVDEVGGEALGR_2 Y 6 Y 1313.6575 0.9984 1.00 PEPTIDE HBB_HUMAN_UPS VVAGVANALAHKYH_3 Y 2 Y 1448.7888 0.7690 1.00 PEPTIDE HBB_HUMAN_UPS VVAGVANALAHK_3 Y 2 Y 1148.6666 0.8998 1.00 PROTEIN 21 LALBA_HUMAN_UPS 0.8395 2 1 1 ALCTEKLEQWLCEK LALBA_HUMAN_UPS P00709ups PEPTIDE LALBA_HUMAN_UPS ALCTEKLEQWLCEK_3 Y 2 Y 1806.8645 0.8395 1.00 PROTEIN 22 CYC_HUMAN_UPS 0.8930 1 2 1 IFIMKCSQCHTVEK NKGIIWGEDTLMEYLENPKK CYC_HUMAN_UPS P99999ups PEPTIDE CYC_HUMAN_UPS IFIMKCSQCHTVEK_3 Y 1 N 1779.8471 0.1135 1.00 PEPTIDE CYC_HUMAN_UPS NKGIIWGEDTLMEYLENPKK_4 Y 1 Y 2377.1988 0.8930 1.00 PROTEIN 23 shuff1_ANT3_HUMAN_UPS 0.2165 1 1 1 TCNSEEVISKK shuff1_ANT3_HUMAN_UPS P01008ups PEPTIDE shuff1_ANT3_HUMAN_UPS TCNSEEVISKK_3 Y 1 Y 1293.6235 0.2165 1.00 PROTEIN 24 shuff1_KCRM_HUMAN_UPS 0.4644 1 1 1 RLQHTSHNKICK shuff1_KCRM_HUMAN_UPS P06732ups PEPTIDE shuff1_KCRM_HUMAN_UPS RLQHTSHNKICK_3 Y 1 Y 1520.7995 0.4644 1.00 PROTEIN 25 CAH1_HUMAN_UPS 1.0000 257 15 1 ADGLAVIGVLMK EIINVGHSFHVNFEDNDNR EIINVGHSFHVNFEDNDNRSVLK ESISVSSEQLAQFR GGPFSDSYR HDTSLKPISVSYNPATAK LFQFHFHWGSTNEHGSEHTVDGVK LYPIANGNNQSPVDIK LYPIANGNNQSPVDIKTSETK SLLSNVEGDNAVPMQHNNR SLLSNVEGDNAVPMQHNNRPTQPLK SLLSNVEGDNAVPMQHNNRPTQPLKGR TSETKHDTSLKPISVSYNPATAK YSAELHVAHWNSAK YSSLAEAASK CAH1_HUMAN_UPS P00915ups PEPTIDE CAH1_HUMAN_UPS ADGLAVIGVLMK_2 Y 38 Y 1185.6791 0.9996 1.00 PEPTIDE CAH1_HUMAN_UPS EIINVGHSFHVNFEDNDNRSVLK_4 Y 9 Y 2682.3150 0.9996 1.00 PEPTIDE CAH1_HUMAN_UPS EIINVGHSFHVNFEDNDNR_3 Y 3 Y 2255.0356 0.9996 1.00 PEPTIDE CAH1_HUMAN_UPS EIINVGHSFHVNFEDNDNR_4 Y 5 Y 2255.0356 0.9996 1.00 PEPTIDE CAH1_HUMAN_UPS ESISVSSEQLAQFR_2 Y 24 Y 1579.7842 0.9886 1.00 PEPTIDE CAH1_HUMAN_UPS ESISVSSEQLAQFR_3 Y 2 Y 1579.7842 0.9996 1.00 PEPTIDE CAH1_HUMAN_UPS GGPFSDSYR_2 Y 6 Y 984.4301 0.9681 1.00 PEPTIDE CAH1_HUMAN_UPS HDTSLKPISVSYNPATAK_2 Y 3 Y 1928.0003 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS HDTSLKPISVSYNPATAK_3 Y 11 Y 1928.0003 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS HDTSLKPISVSYNPATAK_4 Y 9 Y 1928.0003 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS LFQFHFHWGSTNEHGSEHTVDGVK_4 Y 3 Y 2795.2841 0.9996 1.00 PEPTIDE CAH1_HUMAN_UPS LYPIANGNNQSPVDIKTSETK_3 Y 2 Y 2288.1648 0.2201 1.00 PEPTIDE CAH1_HUMAN_UPS LYPIANGNNQSPVDIK_2 Y 45 Y 1741.8999 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS LYPIANGNNQSPVDIK_3 Y 6 Y 1741.8999 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLKGR_4 Y 7 Y 2971.5046 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLKGR_5 Y 12 Y 2971.5046 0.9993 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLK_3 Y 7 Y 2758.3821 0.9926 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLK_4 Y 17 Y 2758.3821 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNR_3 Y 1 Y 2093.9912 0.9018 1.00 PEPTIDE CAH1_HUMAN_UPS TSETKHDTSLKPISVSYNPATAK_3 Y 3 Y 2474.2653 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS TSETKHDTSLKPISVSYNPATAK_4 Y 36 Y 2474.2653 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS TSETKHDTSLKPISVSYNPATAK_5 Y 4 Y 2474.2653 0.9994 1.00 PEPTIDE CAH1_HUMAN_UPS YSAELHVAHWNSAK_3 Y 1 Y 1611.7794 0.9836 1.00 PEPTIDE CAH1_HUMAN_UPS YSAELHVAHWNSAK_4 Y 2 Y 1611.7794 0.9995 1.00 PEPTIDE CAH1_HUMAN_UPS YSSLAEAASK_2 Y 1 Y 1025.5029 0.9498 1.00 PROTEIN 26 SYHC_HUMAN_UPS 1.0000 11 8 1 ASAELIEEEVAK HGAEVIDTPVFELK IFSIVEQR ILDGMFAICGVSDSK RHGAEVIDTPVFELK VFDVIIR VPCVGLSIGVER YDLTVPFAR SYHC_HUMAN_UPS P12081ups PEPTIDE SYHC_HUMAN_UPS ASAELIEEEVAK_2 Y 2 Y 1287.6558 0.9549 1.00 PEPTIDE SYHC_HUMAN_UPS HGAEVIDTPVFELK_2 Y 2 Y 1553.8090 0.9544 1.00 PEPTIDE SYHC_HUMAN_UPS IFSIVEQR_2 Y 2 Y 990.5498 0.8907 1.00 PEPTIDE SYHC_HUMAN_UPS ILDGMFAICGVSDSK_2 Y 2 Y 1611.7637 0.9984 1.00 PEPTIDE SYHC_HUMAN_UPS RHGAEVIDTPVFELK_4 Y 1 Y 1709.9101 0.9984 1.00 PEPTIDE SYHC_HUMAN_UPS VFDVIIR_2 Y 1 N 860.5120 0.1185 1.00 PEPTIDE SYHC_HUMAN_UPS VPCVGLSIGVER_2 Y 1 Y 1284.6860 0.9414 1.00 PEPTIDE SYHC_HUMAN_UPS YDLTVPFAR_2 Y 1 Y 1080.5604 0.8658 1.00 PROTEIN 27 shuff1_B2MG_HUMAN_UPS 0.0000 0 1 1 FPFCNGR shuff1_B2MG_HUMAN_UPS P61769ups PEPTIDE shuff1_B2MG_HUMAN_UPS FPFCNGR_2 Y 1 N 896.3963 0.0152 1.00 PROTEIN 28 CYB5_HUMAN_UPS 0.8466 6 2 1 TFIIGELHPDDRPK YYTLEEIQK CYB5_HUMAN_UPS P00167ups PEPTIDE CYB5_HUMAN_UPS TFIIGELHPDDRPK_3 Y 1 Y 1636.8573 0.2997 1.00 PEPTIDE CYB5_HUMAN_UPS YYTLEEIQK_2 Y 5 Y 1185.5918 0.7810 1.00 PROTEIN 29 shuff1_TRFL_HUMAN_UPS 0.2799 3 1 1 EGIGSVKLVLEKPR shuff1_TRFL_HUMAN_UPS P02788ups PEPTIDE shuff1_TRFL_HUMAN_UPS EGIGSVKLVLEKPR_3 Y 3 Y 1523.9035 0.2799 1.00 PROTEIN 30 shuff1_ANXA5_HUMAN_UPS 0.9955 1 1 1 LTQYDSTLVVQGVQLTAK shuff1_ANXA5_HUMAN_UPS P08758ups PEPTIDE shuff1_ANXA5_HUMAN_UPS LTQYDSTLVVQGVQLTAK_4 Y 1 Y 1963.0626 0.9955 1.00 PROTEIN 31 NQO2_HUMAN_UPS 0.9955 1 1 1 VLAPQISFAPEIASEEER NQO2_HUMAN_UPS P16083ups PEPTIDE NQO2_HUMAN_UPS VLAPQISFAPEIASEEER_2 Y 1 Y 1985.0106 0.9955 1.00 PROTEIN 32 shuff1_CATD_HUMAN_UPS 0.9955 1 1 1 CPRDPLRDVVATFALGEPAPISSEQMR shuff1_CATD_HUMAN_UPS P07339ups PEPTIDE shuff1_CATD_HUMAN_UPS CPRDPLRDVVATFALGEPAPISSEQMR_4 Y 1 Y 3011.4957 0.9955 1.00 PROTEIN 33 PRDX1_HUMAN_UPS 1.0000 42 12 1 ATAVMPDGQFK ATAVMPDGQFKDISLSDYKGK GLFIIDDK KLNCQVIGASVDSHFCHLAWVNTPK KQGGLGPMNIPLVSDPK KQGGLGPMNIPLVSDPKR LNCQVIGASVDSHFCHLAWVNTPKK LVQAFQFTDK QGGLGPMNIPLVSDPK QGGLGPMNIPLVSDPKR QITVNDLPVGR TIAQDYGVLK PRDX1_HUMAN_UPS Q06830ups PEPTIDE PRDX1_HUMAN_UPS ATAVMPDGQFKDISLSDYKGK_4 Y 2 Y 2270.1253 0.9987 1.00 PEPTIDE PRDX1_HUMAN_UPS ATAVMPDGQFK_2 Y 3 Y 1163.5645 0.9566 1.00 PEPTIDE PRDX1_HUMAN_UPS GLFIIDDK_2 Y 4 Y 919.5015 0.9609 1.00 PEPTIDE PRDX1_HUMAN_UPS KLNCQVIGASVDSHFCHLAWVNTPK_4 Y 4 Y 2880.4164 0.9987 1.00 PEPTIDE PRDX1_HUMAN_UPS KQGGLGPMNIPLVSDPKR_3 Y 1 Y 1906.0459 0.9739 1.00 PEPTIDE PRDX1_HUMAN_UPS KQGGLGPMNIPLVSDPK_3 Y 3 Y 1749.9447 0.9701 1.00 PEPTIDE PRDX1_HUMAN_UPS LNCQVIGASVDSHFCHLAWVNTPKK_4 Y 1 Y 2880.4164 0.9987 1.00 PEPTIDE PRDX1_HUMAN_UPS LNCQVIGASVDSHFCHLAWVNTPKK_5 Y 2 Y 2880.4164 0.8867 1.00 PEPTIDE PRDX1_HUMAN_UPS LVQAFQFTDK_2 Y 8 Y 1195.6237 0.9987 1.00 PEPTIDE PRDX1_HUMAN_UPS QGGLGPMNIPLVSDPKR_3 Y 1 Y 1777.9509 0.9606 1.00 PEPTIDE PRDX1_HUMAN_UPS QGGLGPMNIPLVSDPK_2 Y 5 Y 1621.8498 0.9607 1.00 PEPTIDE PRDX1_HUMAN_UPS QITVNDLPVGR_2 Y 7 Y 1210.6670 0.9417 1.00 PEPTIDE PRDX1_HUMAN_UPS TIAQDYGVLK_2 Y 1 Y 1106.5972 0.9046 1.00 PROTEIN 34 CATA_HUMAN_UPS 1.0000 66 20 1 AAQKADVLTTGAGNPVGDKLNVITVGPR ADVLTTGAGNPVGDKLNVITVGPR AFYVNVLNEEQR AFYVNVLNEEQRK DPILFPSFIHSQK DYPLIPVGK FNTANDDNVTQVR GAGAFGYFEVTHDITK GAGAFGYFEVTHDITKYSK GPLLVQDVVFTDEMAHFDR GPLLVQDVVFTDEMAHFDRER LCENIAGHLKDAQIFIQK LCENIAGHLKDAQIFIQKK LFAYPDTHR LGPNYLHIPVNCPYR LSQEDPDYGIR LVNANGEAVYCK NAIHTFVQSGSHLAAR NFTEVHPDYGSHIQALLDK NFTEVHPDYGSHIQALLDKYNAEKPK CATA_HUMAN_UPS P04040ups PEPTIDE CATA_HUMAN_UPS AAQKADVLTTGAGNPVGDKLNVITVGPR_3 Y 2 Y 2761.5086 0.9994 1.00 PEPTIDE CATA_HUMAN_UPS AAQKADVLTTGAGNPVGDKLNVITVGPR_4 Y 4 Y 2761.5086 0.9994 1.00 PEPTIDE CATA_HUMAN_UPS ADVLTTGAGNPVGDKLNVITVGPR_3 Y 4 Y 2363.2809 0.9994 1.00 PEPTIDE CATA_HUMAN_UPS AFYVNVLNEEQRK_2 Y 1 Y 1608.8260 0.8984 1.00 PEPTIDE CATA_HUMAN_UPS AFYVNVLNEEQR_2 Y 3 Y 1480.7310 0.9994 1.00 PEPTIDE CATA_HUMAN_UPS DPILFPSFIHSQK_2 Y 5 Y 1527.8086 0.9573 1.00 PEPTIDE CATA_HUMAN_UPS DYPLIPVGK_2 Y 2 Y 1000.5593 0.3715 1.00 PEPTIDE CATA_HUMAN_UPS FNTANDDNVTQVR_2 Y 1 Y 1492.6906 0.9846 1.00 PEPTIDE CATA_HUMAN_UPS GAGAFGYFEVTHDITKYSK_3 Y 1 Y 2090.0109 0.8677 1.00 PEPTIDE CATA_HUMAN_UPS GAGAFGYFEVTHDITK_2 Y 2 Y 1711.8206 0.9845 1.00 PEPTIDE CATA_HUMAN_UPS GAGAFGYFEVTHDITK_3 Y 1 Y 1711.8206 0.8401 1.00 PEPTIDE CATA_HUMAN_UPS GPLLVQDVVFTDEMAHFDRER_4 Y 1 Y 2473.2060 0.9995 1.00 PEPTIDE CATA_HUMAN_UPS GPLLVQDVVFTDEMAHFDR_3 Y 2 Y 2188.0623 0.9826 1.00 PEPTIDE CATA_HUMAN_UPS LCENIAGHLKDAQIFIQKK_4 Y 4 Y 2225.1991 0.9994 1.00 PEPTIDE CATA_HUMAN_UPS LCENIAGHLKDAQIFIQK_3 Y 2 Y 2097.1041 0.8231 1.00 PEPTIDE CATA_HUMAN_UPS LCENIAGHLKDAQIFIQK_4 Y 4 Y 2097.1041 0.9994 1.00 PEPTIDE CATA_HUMAN_UPS LFAYPDTHR_3 Y 1 Y 1118.5509 0.6816 1.00 PEPTIDE CATA_HUMAN_UPS LGPNYLHIPVNCPYR_2 Y 3 Y 1811.9141 0.9761 1.00 PEPTIDE CATA_HUMAN_UPS LGPNYLHIPVNCPYR_3 Y 12 Y 1811.9141 0.9823 1.00 PEPTIDE CATA_HUMAN_UPS LSQEDPDYGIR_2 Y 2 Y 1291.6044 0.9838 1.00 PEPTIDE CATA_HUMAN_UPS LVNANGEAVYCK_2 Y 1 Y 1336.6446 0.9847 1.00 PEPTIDE CATA_HUMAN_UPS NAIHTFVQSGSHLAAR_3 Y 3 Y 1707.8805 0.9826 1.00 PEPTIDE CATA_HUMAN_UPS NFTEVHPDYGSHIQALLDKYNAEKPK_4 Y 2 Y 3013.4934 0.9995 1.00 PEPTIDE CATA_HUMAN_UPS NFTEVHPDYGSHIQALLDKYNAEKPK_5 Y 1 Y 3013.4934 0.9984 1.00 PEPTIDE CATA_HUMAN_UPS NFTEVHPDYGSHIQALLDK_3 Y 2 Y 2183.0647 0.9807 1.00 PROTEIN 35 UBIQ_HUMAN_UPS 1.0000 12 4 1 QLEDGRTLSDYNIQK TITLEVEPSDTIENVKAK TLSDYNIQK TLSDYNIQKESTLHLVLR UBIQ_HUMAN_UPS P62988ups PEPTIDE UBIQ_HUMAN_UPS QLEDGRTLSDYNIQK_3 Y 1 Y 1778.8799 0.9507 1.00 PEPTIDE UBIQ_HUMAN_UPS TITLEVEPSDTIENVKAK_3 Y 5 Y 1986.0521 0.9516 1.00 PEPTIDE UBIQ_HUMAN_UPS TLSDYNIQKESTLHLVLR_3 Y 2 Y 2129.1481 0.9649 1.00 PEPTIDE UBIQ_HUMAN_UPS TLSDYNIQKESTLHLVLR_4 Y 2 Y 2129.1481 0.9984 1.00 PEPTIDE UBIQ_HUMAN_UPS TLSDYNIQK_2 Y 2 Y 1080.5451 0.6321 1.00 PROTEIN 36 ALBU_HUMAN_UPS 1.0000 672 34 1 AACLLPK AEFAEVSKLVTDLTK AVMDDFAAFVEK CCTESLVNR CCTESLVNRRPCFSALEVDETYVPK FKDLGEENFK FPKAEFAEVSK HPDYSVVLLLR HPYFYAPELLFFAK HPYFYAPELLFFAKR KLVAASQAALGL KQTALVELVK LCTVATLR LDELRDEGK LKECCEKPLLEK LVAASQAALGL LVNEVTEFAK LVRPEVDVMCTAFHDNEETFLK LVRPEVDVMCTAFHDNEETFLKK NECFLQHKDDNPNLPR PCFSALEVDETYVPK PLVEEPQNLIK QNCELFEQLGEYK QTALVELVK RHPDYSVVLLLR RHPYFYAPELLFFAK RHPYFYAPELLFFAKR RPCFSALEVDETYVPK SLHTLFGDKLCTVATLR VFDEFKPLVEEPQNLIK VPQVSTPTLVEVSR YKAAFTECCQAADKAACLLPK YLYEIAR YTKKVPQVSTPTLVEVSR ALBU_HUMAN_UPS P02768ups PEPTIDE ALBU_HUMAN_UPS AACLLPK_2 Y 3 Y 771.4313 0.9713 1.00 PEPTIDE ALBU_HUMAN_UPS AEFAEVSKLVTDLTK_3 Y 1 Y 1649.8876 0.9885 1.00 PEPTIDE ALBU_HUMAN_UPS AVMDDFAAFVEK_2 Y 61 Y 1341.6275 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS AVMDDFAAFVEK_3 Y 1 Y 1341.6275 0.9572 1.00 PEPTIDE ALBU_HUMAN_UPS CCTESLVNRRPCFSALEVDETYVPK_3 Y 1 Y 3029.4046 0.9908 1.00 PEPTIDE ALBU_HUMAN_UPS CCTESLVNRRPCFSALEVDETYVPK_4 Y 3 Y 3029.4046 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS CCTESLVNR_2 Y 4 Y 1137.4908 0.9818 1.00 PEPTIDE ALBU_HUMAN_UPS FKDLGEENFK_3 Y 2 Y 1225.5979 0.9926 1.00 PEPTIDE ALBU_HUMAN_UPS FPKAEFAEVSK_3 Y 1 Y 1251.6499 0.9921 1.00 PEPTIDE ALBU_HUMAN_UPS HPDYSVVLLLR_2 Y 3 Y 1310.7347 0.9875 1.00 PEPTIDE ALBU_HUMAN_UPS HPDYSVVLLLR_3 Y 3 Y 1310.7347 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS HPYFYAPELLFFAKR_3 Y 1 Y 1897.9879 0.9922 1.00 PEPTIDE ALBU_HUMAN_UPS HPYFYAPELLFFAK_2 Y 1 N 1741.8868 0.1444 1.00 PEPTIDE ALBU_HUMAN_UPS HPYFYAPELLFFAK_3 Y 10 Y 1741.8868 0.9871 1.00 PEPTIDE ALBU_HUMAN_UPS KLVAASQAALGL_2 Y 5 Y 1140.6867 0.9232 1.00 PEPTIDE ALBU_HUMAN_UPS KQTALVELVK_2 Y 1 N 1127.6914 0.1132 1.00 PEPTIDE ALBU_HUMAN_UPS KQTALVELVK_3 Y 1 Y 1127.6914 0.9862 1.00 PEPTIDE ALBU_HUMAN_UPS LCTVATLR_2 Y 2 Y 932.5114 0.8709 1.00 PEPTIDE ALBU_HUMAN_UPS LDELRDEGK_3 Y 1 Y 1073.5353 0.7237 1.00 PEPTIDE ALBU_HUMAN_UPS LKECCEKPLLEK_4 Y 3 Y 1545.7896 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS LVAASQAALGL_2 Y 55 Y 1012.5917 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS LVNEVTEFAK_2 Y 142 Y 1148.6077 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLKK_3 Y 2 Y 2777.3517 0.9919 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLKK_4 Y 14 Y 2777.3517 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLKK_5 Y 11 Y 2777.3517 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLK_3 Y 1 Y 2649.2567 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLK_4 Y 1 Y 2649.2567 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS NECFLQHKDDNPNLPR_4 Y 1 Y 1995.9221 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS PCFSALEVDETYVPK_2 Y 2 Y 1753.8233 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS PLVEEPQNLIK_2 Y 1 Y 1278.7184 0.9871 1.00 PEPTIDE ALBU_HUMAN_UPS QNCELFEQLGEYK_2 Y 12 Y 1656.7454 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS QTALVELVK_2 Y 6 Y 999.5964 0.9571 1.00 PEPTIDE ALBU_HUMAN_UPS RHPDYSVVLLLR_2 Y 6 Y 1466.8358 0.9234 1.00 PEPTIDE ALBU_HUMAN_UPS RHPDYSVVLLLR_3 Y 71 Y 1466.8358 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS RHPYFYAPELLFFAKR_4 Y 1 Y 2054.0890 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS RHPYFYAPELLFFAK_2 Y 1 Y 1897.9879 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS RHPYFYAPELLFFAK_3 Y 32 Y 1897.9879 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS RHPYFYAPELLFFAK_4 Y 7 Y 1897.9879 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS RPCFSALEVDETYVPK_2 Y 10 Y 1909.9244 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS RPCFSALEVDETYVPK_3 Y 54 Y 1909.9244 0.9923 1.00 PEPTIDE ALBU_HUMAN_UPS SLHTLFGDKLCTVATLR_2 Y 6 Y 1931.0299 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS SLHTLFGDKLCTVATLR_3 Y 4 Y 1931.0299 0.9923 1.00 PEPTIDE ALBU_HUMAN_UPS SLHTLFGDKLCTVATLR_4 Y 31 Y 1931.0299 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS VFDEFKPLVEEPQNLIK_2 Y 9 Y 2044.0881 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS VFDEFKPLVEEPQNLIK_3 Y 48 Y 2044.0881 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS VPQVSTPTLVEVSR_2 Y 25 Y 1510.8355 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS YKAAFTECCQAADKAACLLPK_3 Y 1 Y 2415.1386 0.9872 1.00 PEPTIDE ALBU_HUMAN_UPS YKAAFTECCQAADKAACLLPK_4 Y 1 Y 2415.1386 0.9996 1.00 PEPTIDE ALBU_HUMAN_UPS YLYEIAR_2 Y 9 Y 926.4862 0.9361 1.00 PEPTIDE ALBU_HUMAN_UPS YTKKVPQVSTPTLVEVSR_3 Y 1 Y 2031.1364 0.9925 1.00 PEPTIDE ALBU_HUMAN_UPS YTKKVPQVSTPTLVEVSR_4 Y 1 Y 2031.1364 0.9996 1.00