#FILE ./MSups_5ul.prot.xml #FILE ./MSups_5ul.prot.xml # DATABASE /project/marcotte/marcotte/ms/database/ms_ups2_sp_CON_shuff.fasta # CUTOFF PROBABILITY 0.00 FPR 0.129 # CUTOFF PROBABILITY 0.10 FPR 0.050 # CUTOFF PROBABILITY 0.20 FPR 0.050 # CUTOFF PROBABILITY 0.30 FPR 0.050 # CUTOFF PROBABILITY 0.40 FPR 0.050 # CUTOFF PROBABILITY 0.50 FPR 0.050 # CUTOFF PROBABILITY 0.60 FPR 0.038 # CUTOFF PROBABILITY 0.70 FPR 0.038 # CUTOFF PROBABILITY 0.80 FPR 0.025 # CUTOFF PROBABILITY 0.90 FPR 0.008 # CUTOFF PROBABILITY 0.95 FPR 0.004 # CUTOFF PROBABILITY 0.96 FPR 0.002 # CUTOFF PROBABILITY 0.97 FPR 0.002 # CUTOFF PROBABILITY 0.98 FPR 0.002 # CUTOFF PROBABILITY 0.99 FPR 0.001 # CUTOFF PROBABILITY 1.00 FPR 0.000 # UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR 0.60 0.50 0.050 0.038 # PROBABILITY CUT (0.05 FDR) 0.50 # UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR 0.60 0.50 0.050 0.038 # PROBABILITY CUT (0.05 FDR) 0.50 # TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS 1333 # TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS 161 # PROTEIN Number Name Probability Contributing_spectral_counts All_unique_peptides No._indistinguishable_proteins Peptides Degenerate Proteins Annotation # PEPTIDE Protein_Name PeptideSequence_Charge Degenerate? Spectral counts Contributing? Neutral_mass(check) Adjusted NPS prob Weight_(degeneracy) # DATA PROTEIN 1 RETBP_HUMAN_UPS 0.9313 8 2 1 DPNGLPPEAQK FSGTWYAMAK RETBP_HUMAN_UPS P02753ups PEPTIDE RETBP_HUMAN_UPS DPNGLPPEAQK_2 Y 2 Y 1164.5775 0.4235 1.00 PEPTIDE RETBP_HUMAN_UPS FSGTWYAMAK_2 Y 6 Y 1160.5325 0.8809 1.00 PROTEIN 2 CO5_HUMAN_UPS 1.0000 39 2 1 AFTECCVVASQLR CIKAFTECCVVASQLR CO5_HUMAN_UPS P01031ups PEPTIDE CO5_HUMAN_UPS AFTECCVVASQLR_2 Y 35 Y 1539.7175 0.9978 1.00 PEPTIDE CO5_HUMAN_UPS AFTECCVVASQLR_3 Y 2 Y 1539.7175 0.9219 1.00 PEPTIDE CO5_HUMAN_UPS CIKAFTECCVVASQLR_3 Y 2 Y 1940.9272 0.9207 1.00 PROTEIN 3 MYG_HUMAN_UPS 1.0000 18 3 1 DMASNYKELGFQG HGATVLTALGGILK HGATVLTALGGILKK MYG_HUMAN_UPS P02144ups PEPTIDE MYG_HUMAN_UPS DMASNYKELGFQG_2 Y 6 Y 1458.6449 0.9985 1.00 PEPTIDE MYG_HUMAN_UPS HGATVLTALGGILKK_2 Y 1 Y 1477.8980 0.7520 1.00 PEPTIDE MYG_HUMAN_UPS HGATVLTALGGILKK_3 Y 4 Y 1477.8980 0.9985 1.00 PEPTIDE MYG_HUMAN_UPS HGATVLTALGGILK_2 Y 4 Y 1349.8031 0.9985 1.00 PEPTIDE MYG_HUMAN_UPS HGATVLTALGGILK_3 Y 3 Y 1349.8031 0.9500 1.00 PROTEIN 4 EGF_HUMAN_UPS 0.9357 10 1 1 DLKWWELR EGF_HUMAN_UPS P01133ups PEPTIDE EGF_HUMAN_UPS DLKWWELR_2 Y 6 Y 1144.6029 0.5899 1.00 PEPTIDE EGF_HUMAN_UPS DLKWWELR_3 Y 4 Y 1144.6029 0.8432 1.00 PROTEIN 5 HBA_HUMAN_UPS 0.9996 21 3 1 FLASVSTVLTSK MFLSFPTTK VGAHAGEYGAEALER HBA_HUMAN_UPS P69905ups PEPTIDE HBA_HUMAN_UPS FLASVSTVLTSK_2 Y 3 Y 1251.7075 0.9022 1.00 PEPTIDE HBA_HUMAN_UPS MFLSFPTTK_2 Y 14 Y 1070.5471 0.9371 1.00 PEPTIDE HBA_HUMAN_UPS VGAHAGEYGAEALER_3 Y 4 Y 1528.7270 0.9304 1.00 PROTEIN 6 TRFE_HUMAN_UPS 0.8453 1 1 1 PVVAEFYGSKEDPQTFYYAVAVVKK TRFE_HUMAN_UPS P02787ups PEPTIDE TRFE_HUMAN_UPS PVVAEFYGSKEDPQTFYYAVAVVKK_5 Y 1 Y 2834.4531 0.8453 1.00 PROTEIN 7 UBE2C_HUMAN_UPS 0.9517 2 1 1 KYLQETYSKQVTSQEP UBE2C_HUMAN_UPS O00762ups PEPTIDE UBE2C_HUMAN_UPS KYLQETYSKQVTSQEP_4 Y 2 Y 1927.9527 0.9517 1.00 PROTEIN 8 NQO1_HUMAN_UPS 0.9930 4 2 1 IQILEGWK IQILEGWKK NQO1_HUMAN_UPS P15559ups PEPTIDE NQO1_HUMAN_UPS IQILEGWKK_3 Y 2 Y 1113.6546 0.9484 1.00 PEPTIDE NQO1_HUMAN_UPS IQILEGWK_2 Y 2 Y 985.5597 0.8641 1.00 PROTEIN 9 PPIA_HUMAN_UPS 1.0000 25 8 1 FEDENFILK IIPGFMCQGGDFTR ITIADCGQLE KITIADCGQLE TEWLDGKHVVFGK VKEGMNIVEAMER VSFELFADK VSFELFADKVPK PPIA_HUMAN_UPS P62937ups PEPTIDE PPIA_HUMAN_UPS FEDENFILK_2 Y 7 Y 1153.5655 0.9500 1.00 PEPTIDE PPIA_HUMAN_UPS IIPGFMCQGGDFTR_2 Y 1 Y 1597.7382 0.9615 1.00 PEPTIDE PPIA_HUMAN_UPS ITIADCGQLE_2 Y 1 Y 1118.5278 0.6047 1.00 PEPTIDE PPIA_HUMAN_UPS KITIADCGQLE_2 Y 2 N 1246.6228 0.1645 1.00 PEPTIDE PPIA_HUMAN_UPS TEWLDGKHVVFGK_3 Y 3 Y 1514.7882 0.9604 1.00 PEPTIDE PPIA_HUMAN_UPS VKEGMNIVEAMER_2 Y 2 Y 1504.7378 0.9985 1.00 PEPTIDE PPIA_HUMAN_UPS VKEGMNIVEAMER_3 Y 3 Y 1504.7378 0.6312 1.00 PEPTIDE PPIA_HUMAN_UPS VSFELFADKVPK_2 Y 1 Y 1378.7497 0.7514 1.00 PEPTIDE PPIA_HUMAN_UPS VSFELFADKVPK_3 Y 4 Y 1378.7497 0.9985 1.00 PEPTIDE PPIA_HUMAN_UPS VSFELFADK_2 Y 3 Y 1054.5335 0.9635 1.00 PROTEIN 10 NEDD8_HUMAN_UPS 0.8339 2 1 1 EIEIDIEPTDKVER NEDD8_HUMAN_UPS Q15843ups PEPTIDE NEDD8_HUMAN_UPS EIEIDIEPTDKVER_3 Y 2 Y 1684.8519 0.8339 1.00 PROTEIN 11 shuff1_CATA_HUMAN_UPS 1.0000 2 3 1 AHTDVIFSSVNYSAVLDLGNDAGRE AIVGNGETAPHMHLNGINPR VINPGKIIFTDAEEATR shuff1_CATA_HUMAN_UPS P04040ups PEPTIDE shuff1_CATA_HUMAN_UPS AHTDVIFSSVNYSAVLDLGNDAGRE_4 Y 1 Y 2649.2671 0.9978 1.00 PEPTIDE shuff1_CATA_HUMAN_UPS AHTDVIFSSVNYSAVLDLGNDAGRE_5 Y 1 Y 2649.2671 0.9775 1.00 PEPTIDE shuff1_CATA_HUMAN_UPS AIVGNGETAPHMHLNGINPR_3 Y 2 N 2097.0538 0.1633 1.00 PEPTIDE shuff1_CATA_HUMAN_UPS VINPGKIIFTDAEEATR_3 Y 1 N 1872.9945 0.0714 1.00 PROTEIN 12 LYSC_HUMAN_UPS 0.7700 1 1 1 GISLANWMCLAK LYSC_HUMAN_UPS P61626ups PEPTIDE LYSC_HUMAN_UPS GISLANWMCLAK_2 Y 1 Y 1362.6788 0.7700 1.00 PROTEIN 13 shuff1_NQO2_HUMAN_UPS 0.9808 1 1 1 HWADAAQEDFTKKEDIENFQITAK shuff1_NQO2_HUMAN_UPS P16083ups PEPTIDE shuff1_NQO2_HUMAN_UPS HWADAAQEDFTKKEDIENFQITAK_5 Y 1 Y 2834.3511 0.9808 1.00 PROTEIN 14 UBC9_HUMAN_UPS 0.7576 3 2 1 GTPWEGGLFK MLFKDDYPSSPPK UBC9_HUMAN_UPS P63279ups PEPTIDE UBC9_HUMAN_UPS GTPWEGGLFK_2 Y 1 N 1090.5447 0.1245 1.00 PEPTIDE UBC9_HUMAN_UPS MLFKDDYPSSPPK_3 Y 3 Y 1523.7330 0.7576 1.00 PROTEIN 15 KCRM_HUMAN_UPS 1.0000 16 6 1 ELFDPIISDR LNYKPEEEYPDLSK LSVEALNSLTGEFK LSVEALNSLTGEFKGK SFLVWVNEEDHLR TDLNHENLKGGDDLDPNYVLSSR KCRM_HUMAN_UPS P06732ups PEPTIDE KCRM_HUMAN_UPS ELFDPIISDR_2 Y 3 Y 1203.6136 0.9539 1.00 PEPTIDE KCRM_HUMAN_UPS LNYKPEEEYPDLSK_3 Y 5 Y 1723.8305 0.9491 1.00 PEPTIDE KCRM_HUMAN_UPS LSVEALNSLTGEFKGK_3 Y 2 Y 1691.9094 0.8682 1.00 PEPTIDE KCRM_HUMAN_UPS LSVEALNSLTGEFK_2 Y 1 Y 1506.7930 0.9985 1.00 PEPTIDE KCRM_HUMAN_UPS SFLVWVNEEDHLR_2 Y 2 Y 1642.8104 0.9625 1.00 PEPTIDE KCRM_HUMAN_UPS SFLVWVNEEDHLR_3 Y 1 Y 1642.8104 0.9473 1.00 PEPTIDE KCRM_HUMAN_UPS TDLNHENLKGGDDLDPNYVLSSR_4 Y 2 Y 2571.2201 0.9985 1.00 PROTEIN 16 CAH2_HUMAN_UPS 1.0000 134 9 1 AVQQPDGLAVLGIFLK ILNNGHAFNVEFDDSQDKAVLK LIQFHFHWGSLDGQGSEHTVDK LIQFHFHWGSLDGQGSEHTVDKK QSPVDIDTHTAK SADFTNFDPR YAAELHLVHWNTK YAAELHLVHWNTKYGDFGK YDPSLKPLSVSYDQATSLR CAH2_HUMAN_UPS P00918ups PEPTIDE CAH2_HUMAN_UPS AVQQPDGLAVLGIFLK_2 Y 1 Y 1667.9610 0.9637 1.00 PEPTIDE CAH2_HUMAN_UPS ILNNGHAFNVEFDDSQDKAVLK_4 Y 1 Y 2473.2238 0.9986 1.00 PEPTIDE CAH2_HUMAN_UPS LIQFHFHWGSLDGQGSEHTVDKK_5 Y 1 Y 2665.3037 0.9986 1.00 PEPTIDE CAH2_HUMAN_UPS LIQFHFHWGSLDGQGSEHTVDK_4 Y 1 Y 2537.2088 0.9986 1.00 PEPTIDE CAH2_HUMAN_UPS QSPVDIDTHTAK_3 Y 1 Y 1310.6466 0.9345 1.00 PEPTIDE CAH2_HUMAN_UPS SADFTNFDPR_2 Y 54 Y 1168.5149 0.9986 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTKYGDFGK_4 Y 1 Y 2248.1065 0.9986 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTK_2 Y 3 Y 1580.8100 0.9986 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTK_3 Y 2 Y 1580.8100 0.9364 1.00 PEPTIDE CAH2_HUMAN_UPS YAAELHLVHWNTK_4 Y 6 Y 1580.8100 0.9986 1.00 PEPTIDE CAH2_HUMAN_UPS YDPSLKPLSVSYDQATSLR_2 Y 7 Y 2139.0848 0.7719 1.00 PEPTIDE CAH2_HUMAN_UPS YDPSLKPLSVSYDQATSLR_3 Y 56 Y 2139.0848 0.9986 1.00 PROTEIN 17 LEP_HUMAN_UPS 1.0000 114 2 1 DLLHVLAFSK NVIQISNDLENLR LEP_HUMAN_UPS P41159ups PEPTIDE LEP_HUMAN_UPS DLLHVLAFSK_2 Y 27 Y 1141.6495 0.9637 1.00 PEPTIDE LEP_HUMAN_UPS DLLHVLAFSK_3 Y 14 Y 1141.6495 0.9575 1.00 PEPTIDE LEP_HUMAN_UPS NVIQISNDLENLR_2 Y 67 Y 1526.8053 0.9554 1.00 PEPTIDE LEP_HUMAN_UPS NVIQISNDLENLR_3 Y 6 Y 1526.8053 0.9624 1.00 PROTEIN 18 SUMO1_HUMAN_UPS 1.0000 22 10 1 AEISMLEGAVLDIR DFETLKVDFLSK ERAEISMLEGAVLDIR FLFEGQR IAYSKDFETLKVDFLSK IEAIPQIDKYLK LLLEYLEEK LTQSMAIIR MSPILGYWK RIEAIPQIDKYLK SUMO1_HUMAN_UPS P63165ups PEPTIDE SUMO1_HUMAN_UPS AEISMLEGAVLDIR_2 Y 2 Y 1515.7967 0.9631 1.00 PEPTIDE SUMO1_HUMAN_UPS AEISMLEGAVLDIR_3 Y 1 Y 1515.7967 0.8785 1.00 PEPTIDE SUMO1_HUMAN_UPS DFETLKVDFLSK_2 Y 1 Y 1440.7500 0.9986 1.00 PEPTIDE SUMO1_HUMAN_UPS DFETLKVDFLSK_3 Y 1 Y 1440.7500 0.9422 1.00 PEPTIDE SUMO1_HUMAN_UPS ERAEISMLEGAVLDIR_3 Y 1 Y 1800.9404 0.3798 1.00 PEPTIDE SUMO1_HUMAN_UPS FLFEGQR_2 Y 3 Y 895.4552 0.9254 1.00 PEPTIDE SUMO1_HUMAN_UPS IAYSKDFETLKVDFLSK_3 Y 1 Y 2003.0615 0.9543 1.00 PEPTIDE SUMO1_HUMAN_UPS IAYSKDFETLKVDFLSK_4 Y 1 Y 2003.0615 0.9986 1.00 PEPTIDE SUMO1_HUMAN_UPS IEAIPQIDKYLK_3 Y 4 Y 1429.8181 0.5992 1.00 PEPTIDE SUMO1_HUMAN_UPS LLLEYLEEK_2 Y 3 Y 1148.6329 0.6884 1.00 PEPTIDE SUMO1_HUMAN_UPS LTQSMAIIR_2 Y 1 N 1031.5798 0.0791 1.00 PEPTIDE SUMO1_HUMAN_UPS MSPILGYWK_2 Y 2 Y 1093.5630 0.9623 1.00 PEPTIDE SUMO1_HUMAN_UPS RIEAIPQIDKYLK_3 Y 2 Y 1585.9192 0.8530 1.00 PROTEIN 19 BID_HUMAN_UPS 0.9960 5 1 1 NRDLATALEQLLQAYPRDMEK BID_HUMAN_UPS P55957ups PEPTIDE BID_HUMAN_UPS NRDLATALEQLLQAYPRDMEK_4 Y 5 Y 2474.2588 0.9960 1.00 PROTEIN 20 HBB_HUMAN_UPS 1.0000 47 7 1 EFTPPVQAAYQK GTFATLSELHCDK KVLGAFSDGLAHLDNLK LLVVYPWTQR SAVTALWGK VNVDEVGGEALGR VVAGVANALAHKYH HBB_HUMAN_UPS P68871ups PEPTIDE HBB_HUMAN_UPS EFTPPVQAAYQK_2 Y 13 Y 1377.6929 0.9644 1.00 PEPTIDE HBB_HUMAN_UPS GTFATLSELHCDK_2 Y 1 Y 1477.6872 0.9424 1.00 PEPTIDE HBB_HUMAN_UPS GTFATLSELHCDK_3 Y 3 Y 1477.6872 0.6441 1.00 PEPTIDE HBB_HUMAN_UPS KVLGAFSDGLAHLDNLK_2 Y 1 Y 1796.9785 0.9986 1.00 PEPTIDE HBB_HUMAN_UPS KVLGAFSDGLAHLDNLK_3 Y 7 Y 1796.9785 0.9986 1.00 PEPTIDE HBB_HUMAN_UPS KVLGAFSDGLAHLDNLK_4 Y 1 Y 1796.9785 0.9986 1.00 PEPTIDE HBB_HUMAN_UPS LLVVYPWTQR_2 Y 9 Y 1273.7183 0.9644 1.00 PEPTIDE HBB_HUMAN_UPS SAVTALWGK_2 Y 5 Y 931.5127 0.9644 1.00 PEPTIDE HBB_HUMAN_UPS VNVDEVGGEALGR_2 Y 7 Y 1313.6575 0.9986 1.00 PEPTIDE HBB_HUMAN_UPS VVAGVANALAHKYH_3 Y 1 N 1448.7888 0.0581 1.00 PROTEIN 21 CYC_HUMAN_UPS 0.0000 0 1 1 IFIMKCSQCHTVEK CYC_HUMAN_UPS P99999ups PEPTIDE CYC_HUMAN_UPS IFIMKCSQCHTVEK_3 Y 3 N 1779.8471 0.0995 1.00 PROTEIN 22 shuff1_ANT3_HUMAN_UPS 0.8070 4 2 1 TCNSEEVISKK YLPAEFVHVPMYMVR shuff1_ANT3_HUMAN_UPS P01008ups PEPTIDE shuff1_ANT3_HUMAN_UPS TCNSEEVISKK_3 Y 2 Y 1293.6235 0.3156 1.00 PEPTIDE shuff1_ANT3_HUMAN_UPS YLPAEFVHVPMYMVR_3 Y 2 Y 1850.9212 0.7181 1.00 PROTEIN 23 shuff1_KCRM_HUMAN_UPS 0.5743 2 1 1 RLQHTSHNKICK shuff1_KCRM_HUMAN_UPS P06732ups PEPTIDE shuff1_KCRM_HUMAN_UPS RLQHTSHNKICK_3 Y 2 Y 1520.7995 0.5743 1.00 PROTEIN 24 CAH1_HUMAN_UPS 1.0000 258 13 1 ADGLAVIGVLMK EIINVGHSFHVNFEDNDNR EIINVGHSFHVNFEDNDNRSVLK ESISVSSEQLAQFR GGPFSDSYR HDTSLKPISVSYNPATAK LFQFHFHWGSTNEHGSEHTVDGVK LYPIANGNNQSPVDIK LYPIANGNNQSPVDIKTSETK SLLSNVEGDNAVPMQHNNRPTQPLK SLLSNVEGDNAVPMQHNNRPTQPLKGR TSETKHDTSLKPISVSYNPATAK YSAELHVAHWNSAK CAH1_HUMAN_UPS P00915ups PEPTIDE CAH1_HUMAN_UPS ADGLAVIGVLMK_2 Y 47 Y 1185.6791 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS EIINVGHSFHVNFEDNDNRSVLK_4 Y 8 Y 2682.3150 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS EIINVGHSFHVNFEDNDNRSVLK_5 Y 2 Y 2682.3150 0.9981 1.00 PEPTIDE CAH1_HUMAN_UPS EIINVGHSFHVNFEDNDNR_3 Y 2 Y 2255.0356 0.9925 1.00 PEPTIDE CAH1_HUMAN_UPS EIINVGHSFHVNFEDNDNR_4 Y 1 Y 2255.0356 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS ESISVSSEQLAQFR_2 Y 22 Y 1579.7842 0.9943 1.00 PEPTIDE CAH1_HUMAN_UPS ESISVSSEQLAQFR_3 Y 4 Y 1579.7842 0.9937 1.00 PEPTIDE CAH1_HUMAN_UPS GGPFSDSYR_2 Y 1 Y 984.4301 0.9335 1.00 PEPTIDE CAH1_HUMAN_UPS HDTSLKPISVSYNPATAK_2 Y 4 Y 1928.0003 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS HDTSLKPISVSYNPATAK_3 Y 9 Y 1928.0003 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS HDTSLKPISVSYNPATAK_4 Y 18 Y 1928.0003 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS LFQFHFHWGSTNEHGSEHTVDGVK_4 Y 2 Y 2795.2841 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS LFQFHFHWGSTNEHGSEHTVDGVK_5 Y 1 Y 2795.2841 0.9994 1.00 PEPTIDE CAH1_HUMAN_UPS LYPIANGNNQSPVDIKTSETK_3 Y 1 Y 2288.1648 0.7896 1.00 PEPTIDE CAH1_HUMAN_UPS LYPIANGNNQSPVDIK_2 Y 50 Y 1741.8999 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS LYPIANGNNQSPVDIK_3 Y 8 Y 1741.8999 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLKGR_3 Y 3 Y 2971.5046 0.9923 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLKGR_4 Y 4 Y 2971.5046 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLKGR_5 Y 6 Y 2971.5046 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLK_3 Y 4 Y 2758.3821 0.9928 1.00 PEPTIDE CAH1_HUMAN_UPS SLLSNVEGDNAVPMQHNNRPTQPLK_4 Y 22 Y 2758.3821 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS TSETKHDTSLKPISVSYNPATAK_3 Y 3 Y 2474.2653 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS TSETKHDTSLKPISVSYNPATAK_4 Y 27 Y 2474.2653 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS TSETKHDTSLKPISVSYNPATAK_5 Y 5 Y 2474.2653 0.9998 1.00 PEPTIDE CAH1_HUMAN_UPS YSAELHVAHWNSAK_3 Y 1 Y 1611.7794 0.9852 1.00 PEPTIDE CAH1_HUMAN_UPS YSAELHVAHWNSAK_4 Y 3 Y 1611.7794 0.9998 1.00 PROTEIN 25 SYHC_HUMAN_UPS 1.0000 15 10 1 ASAELIEEEVAK EEVDVRREDLVEEIK HGAEVIDTPVFELK IFSIVEQR ILDGMFAICGVSDSK ISFDLSLAR LVSELWDAGIK RHGAEVIDTPVFELK VFDVIIR VPCVGLSIGVER SYHC_HUMAN_UPS P12081ups PEPTIDE SYHC_HUMAN_UPS ASAELIEEEVAK_2 Y 2 Y 1287.6558 0.9644 1.00 PEPTIDE SYHC_HUMAN_UPS EEVDVRREDLVEEIK_3 Y 1 Y 1856.9480 0.2680 1.00 PEPTIDE SYHC_HUMAN_UPS HGAEVIDTPVFELK_2 Y 2 Y 1553.8090 0.9644 1.00 PEPTIDE SYHC_HUMAN_UPS HGAEVIDTPVFELK_3 Y 1 Y 1553.8090 0.3795 1.00 PEPTIDE SYHC_HUMAN_UPS IFSIVEQR_2 Y 2 Y 990.5498 0.7949 1.00 PEPTIDE SYHC_HUMAN_UPS ILDGMFAICGVSDSK_2 Y 2 Y 1611.7637 0.9986 1.00 PEPTIDE SYHC_HUMAN_UPS ISFDLSLAR_2 Y 1 N 1020.5604 0.1544 1.00 PEPTIDE SYHC_HUMAN_UPS LVSELWDAGIK_2 Y 1 Y 1229.6656 0.9040 1.00 PEPTIDE SYHC_HUMAN_UPS RHGAEVIDTPVFELK_4 Y 1 Y 1709.9101 0.9274 1.00 PEPTIDE SYHC_HUMAN_UPS VFDVIIR_2 Y 2 Y 860.5120 0.8890 1.00 PEPTIDE SYHC_HUMAN_UPS VPCVGLSIGVER_2 Y 1 Y 1284.6860 0.9630 1.00 PROTEIN 26 CYB5_HUMAN_UPS 1.0000 6 3 1 TFIIGELHPDDR TFIIGELHPDDRPK YYTLEEIQK CYB5_HUMAN_UPS P00167ups PEPTIDE CYB5_HUMAN_UPS TFIIGELHPDDRPK_3 Y 1 Y 1636.8573 0.4403 1.00 PEPTIDE CYB5_HUMAN_UPS TFIIGELHPDDRPK_4 Y 1 Y 1636.8573 0.9978 1.00 PEPTIDE CYB5_HUMAN_UPS TFIIGELHPDDR_3 Y 1 Y 1411.7096 0.8787 1.00 PEPTIDE CYB5_HUMAN_UPS YYTLEEIQK_2 Y 3 Y 1185.5918 0.9179 1.00 PROTEIN 27 shuff1_GELS_HUMAN_UPS 0.9960 1 1 1 IEKDRALELLHGEEPSAEEDLASR shuff1_GELS_HUMAN_UPS P06396ups PEPTIDE shuff1_GELS_HUMAN_UPS IEKDRALELLHGEEPSAEEDLASR_4 Y 1 Y 2706.3461 0.9960 1.00 PROTEIN 28 CATG_HUMAN_UPS 0.9960 1 1 1 AAFKGDSGGPLLCNNVAHGIVSYGK CATG_HUMAN_UPS P08311ups PEPTIDE CATG_HUMAN_UPS AAFKGDSGGPLLCNNVAHGIVSYGK_4 Y 1 Y 2531.2591 0.9960 1.00 PROTEIN 29 NQO2_HUMAN_UPS 0.9960 1 1 1 VLAPQISFAPEIASEEER NQO2_HUMAN_UPS P16083ups PEPTIDE NQO2_HUMAN_UPS VLAPQISFAPEIASEEER_2 Y 1 Y 1985.0106 0.9960 1.00 PROTEIN 30 IFNG_HUMAN_UPS 0.0000 0 1 1 RDDFEKLTNYSVTDLNVQR IFNG_HUMAN_UPS P01579ups PEPTIDE IFNG_HUMAN_UPS RDDFEKLTNYSVTDLNVQR_4 Y 1 N 2312.1397 0.0188 1.00 PROTEIN 31 PRDX1_HUMAN_UPS 1.0000 48 12 1 ATAVMPDGQFK ATAVMPDGQFKDISLSDYKGK GLFIIDDK GLFIIDDKGILR KQGGLGPMNIPLVSDPK KQGGLGPMNIPLVSDPKR LVQAFQFTDK QGGLGPMNIPLVSDPK QGGLGPMNIPLVSDPKR QITVNDLPVGR TIAQDYGVLK TIAQDYGVLKADEGISFR PRDX1_HUMAN_UPS Q06830ups PEPTIDE PRDX1_HUMAN_UPS ATAVMPDGQFKDISLSDYKGK_3 Y 2 Y 2270.1253 0.9340 1.00 PEPTIDE PRDX1_HUMAN_UPS ATAVMPDGQFKDISLSDYKGK_4 Y 2 Y 2270.1253 0.9986 1.00 PEPTIDE PRDX1_HUMAN_UPS ATAVMPDGQFK_2 Y 1 Y 1163.5645 0.9130 1.00 PEPTIDE PRDX1_HUMAN_UPS GLFIIDDKGILR_2 Y 1 Y 1358.7922 0.9986 1.00 PEPTIDE PRDX1_HUMAN_UPS GLFIIDDK_2 Y 5 Y 919.5015 0.9641 1.00 PEPTIDE PRDX1_HUMAN_UPS KQGGLGPMNIPLVSDPKR_3 Y 1 Y 1906.0459 0.9986 1.00 PEPTIDE PRDX1_HUMAN_UPS KQGGLGPMNIPLVSDPK_3 Y 5 Y 1749.9447 0.9658 1.00 PEPTIDE PRDX1_HUMAN_UPS LVQAFQFTDK_2 Y 7 Y 1195.6237 0.9631 1.00 PEPTIDE PRDX1_HUMAN_UPS QGGLGPMNIPLVSDPKR_3 Y 2 Y 1777.9509 0.9578 1.00 PEPTIDE PRDX1_HUMAN_UPS QGGLGPMNIPLVSDPK_2 Y 5 Y 1621.8498 0.9644 1.00 PEPTIDE PRDX1_HUMAN_UPS QITVNDLPVGR_2 Y 10 Y 1210.6670 0.9564 1.00 PEPTIDE PRDX1_HUMAN_UPS TIAQDYGVLKADEGISFR_2 Y 2 Y 1982.0109 0.7678 1.00 PEPTIDE PRDX1_HUMAN_UPS TIAQDYGVLKADEGISFR_3 Y 3 Y 1982.0109 0.4757 1.00 PEPTIDE PRDX1_HUMAN_UPS TIAQDYGVLK_2 Y 2 Y 1106.5972 0.7651 1.00 PROTEIN 32 CATA_HUMAN_UPS 1.0000 66 17 1 AAQKADVLTTGAGNPVGDKLNVITVGPR ADVLTTGAGNPVGDKLNVITVGPR AFYVNVLNEEQR AFYVNVLNEEQRK DPILFPSFIHSQK DPILFPSFIHSQKR FNTANDDNVTQVR FSTVAGESGSADTVRDPR GAGAFGYFEVTHDITK GAGAFGYFEVTHDITKYSK LCENIAGHLKDAQIFIQK LCENIAGHLKDAQIFIQKK LFAYPDTHR LGPNYLHIPVNCPYR LSQEDPDYGIR NAIHTFVQSGSHLAAR NFTEVHPDYGSHIQALLDK CATA_HUMAN_UPS P04040ups PEPTIDE CATA_HUMAN_UPS AAQKADVLTTGAGNPVGDKLNVITVGPR_3 Y 2 Y 2761.5086 0.9759 1.00 PEPTIDE CATA_HUMAN_UPS AAQKADVLTTGAGNPVGDKLNVITVGPR_4 Y 8 Y 2761.5086 0.9992 1.00 PEPTIDE CATA_HUMAN_UPS ADVLTTGAGNPVGDKLNVITVGPR_3 Y 3 Y 2363.2809 0.9992 1.00 PEPTIDE CATA_HUMAN_UPS AFYVNVLNEEQRK_2 Y 1 Y 1608.8260 0.8608 1.00 PEPTIDE CATA_HUMAN_UPS AFYVNVLNEEQR_2 Y 1 Y 1480.7310 0.9803 1.00 PEPTIDE CATA_HUMAN_UPS DPILFPSFIHSQKR_3 Y 4 Y 1683.9097 0.8748 1.00 PEPTIDE CATA_HUMAN_UPS DPILFPSFIHSQK_2 Y 2 Y 1527.8086 0.9351 1.00 PEPTIDE CATA_HUMAN_UPS DPILFPSFIHSQK_3 Y 2 Y 1527.8086 0.9787 1.00 PEPTIDE CATA_HUMAN_UPS FNTANDDNVTQVR_2 Y 1 Y 1492.6906 0.9808 1.00 PEPTIDE CATA_HUMAN_UPS FSTVAGESGSADTVRDPR_3 Y 1 N 1850.8759 0.0528 1.00 PEPTIDE CATA_HUMAN_UPS GAGAFGYFEVTHDITKYSK_3 Y 1 Y 2090.0109 0.5799 1.00 PEPTIDE CATA_HUMAN_UPS GAGAFGYFEVTHDITK_2 Y 3 Y 1711.8206 0.9809 1.00 PEPTIDE CATA_HUMAN_UPS GAGAFGYFEVTHDITK_3 Y 3 Y 1711.8206 0.8934 1.00 PEPTIDE CATA_HUMAN_UPS LCENIAGHLKDAQIFIQKK_4 Y 5 Y 2225.1991 0.9992 1.00 PEPTIDE CATA_HUMAN_UPS LCENIAGHLKDAQIFIQK_3 Y 2 Y 2097.1041 0.9348 1.00 PEPTIDE CATA_HUMAN_UPS LCENIAGHLKDAQIFIQK_4 Y 3 Y 2097.1041 0.9992 1.00 PEPTIDE CATA_HUMAN_UPS LFAYPDTHR_3 Y 1 Y 1118.5509 0.2343 1.00 PEPTIDE CATA_HUMAN_UPS LGPNYLHIPVNCPYR_2 Y 3 Y 1811.9141 0.9731 1.00 PEPTIDE CATA_HUMAN_UPS LGPNYLHIPVNCPYR_3 Y 13 Y 1811.9141 0.9800 1.00 PEPTIDE CATA_HUMAN_UPS LSQEDPDYGIR_2 Y 2 Y 1291.6044 0.9799 1.00 PEPTIDE CATA_HUMAN_UPS NAIHTFVQSGSHLAAR_3 Y 4 Y 1707.8805 0.9789 1.00 PEPTIDE CATA_HUMAN_UPS NFTEVHPDYGSHIQALLDK_3 Y 2 Y 2183.0647 0.9471 1.00 PROTEIN 33 UBIQ_HUMAN_UPS 1.0000 12 3 1 TITLEVEPSDTIENVKAK TLSDYNIQK TLSDYNIQKESTLHLVLR UBIQ_HUMAN_UPS P62988ups PEPTIDE UBIQ_HUMAN_UPS TITLEVEPSDTIENVKAK_3 Y 6 Y 1986.0521 0.8762 1.00 PEPTIDE UBIQ_HUMAN_UPS TLSDYNIQKESTLHLVLR_3 Y 3 Y 2129.1481 0.9422 1.00 PEPTIDE UBIQ_HUMAN_UPS TLSDYNIQKESTLHLVLR_4 Y 2 Y 2129.1481 0.9978 1.00 PEPTIDE UBIQ_HUMAN_UPS TLSDYNIQK_2 Y 1 Y 1080.5451 0.5902 1.00 PROTEIN 34 GELS_HUMAN_UPS 0.9960 1 1 1 DPDQTDGLGLSYLSSHIANVER GELS_HUMAN_UPS P06396ups PEPTIDE GELS_HUMAN_UPS DPDQTDGLGLSYLSSHIANVER_4 Y 1 Y 2386.1401 0.9960 1.00 PROTEIN 35 ALBU_HUMAN_UPS 1.0000 443 26 1 AACLLPK AEFAEVSKLVTDLTK ATKEQLKAVMDDFAAFVEK AVMDDFAAFVEK CCTESLVNR FKDLGEENFK HPDYSVVLLLR KLVAASQAALGL LKECCEKPLLEK LVAASQAALGL LVNEVTEFAK LVRPEVDVMCTAFHDNEETFLK LVRPEVDVMCTAFHDNEETFLKK PCFSALEVDETYVPK PLVEEPQNLIK QNCELFEQLGEYK QTALVELVK RHPDYSVVLLLR RPCFSALEVDETYVPK SLHTLFGDKLCTVATLR VFDEFKPLVEEPQNLIK VPQVSTPTLVEVSR YKAAFTECCQAADK YKAAFTECCQAADKAACLLPK YLYEIAR YTKKVPQVSTPTLVEVSR ALBU_HUMAN_UPS P02768ups PEPTIDE ALBU_HUMAN_UPS AACLLPK_2 Y 1 Y 771.4313 0.8599 1.00 PEPTIDE ALBU_HUMAN_UPS AEFAEVSKLVTDLTK_2 Y 2 Y 1649.8876 0.9567 1.00 PEPTIDE ALBU_HUMAN_UPS AEFAEVSKLVTDLTK_3 Y 2 Y 1649.8876 0.9879 1.00 PEPTIDE ALBU_HUMAN_UPS ATKEQLKAVMDDFAAFVEK_3 Y 1 Y 2140.0874 0.9557 1.00 PEPTIDE ALBU_HUMAN_UPS AVMDDFAAFVEK_2 Y 43 Y 1341.6275 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS AVMDDFAAFVEK_3 Y 2 Y 1341.6275 0.9887 1.00 PEPTIDE ALBU_HUMAN_UPS CCTESLVNR_2 Y 1 Y 1137.4908 0.9772 1.00 PEPTIDE ALBU_HUMAN_UPS FKDLGEENFK_3 Y 2 Y 1225.5979 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS HPDYSVVLLLR_2 Y 2 Y 1310.7347 0.9904 1.00 PEPTIDE ALBU_HUMAN_UPS HPDYSVVLLLR_3 Y 5 Y 1310.7347 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS KLVAASQAALGL_2 Y 8 Y 1140.6867 0.9556 1.00 PEPTIDE ALBU_HUMAN_UPS LKECCEKPLLEK_4 Y 3 Y 1545.7896 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS LVAASQAALGL_2 Y 58 Y 1012.5917 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS LVNEVTEFAK_2 Y 85 Y 1148.6077 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLKK_3 Y 1 Y 2777.3517 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLKK_4 Y 2 Y 2777.3517 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLKK_5 Y 1 Y 2777.3517 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS LVRPEVDVMCTAFHDNEETFLK_4 Y 1 Y 2649.2567 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS PCFSALEVDETYVPK_2 Y 2 Y 1753.8233 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS PLVEEPQNLIK_2 Y 2 Y 1278.7184 0.9936 1.00 PEPTIDE ALBU_HUMAN_UPS QNCELFEQLGEYK_2 Y 18 Y 1656.7454 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS QNCELFEQLGEYK_3 Y 3 Y 1656.7454 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS QTALVELVK_2 Y 5 Y 999.5964 0.9826 1.00 PEPTIDE ALBU_HUMAN_UPS RHPDYSVVLLLR_2 Y 4 Y 1466.8358 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS RHPDYSVVLLLR_3 Y 61 Y 1466.8358 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS RPCFSALEVDETYVPK_2 Y 11 Y 1909.9244 0.9569 1.00 PEPTIDE ALBU_HUMAN_UPS RPCFSALEVDETYVPK_3 Y 46 Y 1909.9244 0.9939 1.00 PEPTIDE ALBU_HUMAN_UPS SLHTLFGDKLCTVATLR_2 Y 5 Y 1931.0299 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS SLHTLFGDKLCTVATLR_3 Y 4 Y 1931.0299 0.9945 1.00 PEPTIDE ALBU_HUMAN_UPS SLHTLFGDKLCTVATLR_4 Y 24 Y 1931.0299 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS VFDEFKPLVEEPQNLIK_2 Y 1 Y 2044.0881 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS VFDEFKPLVEEPQNLIK_3 Y 5 Y 2044.0881 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS VPQVSTPTLVEVSR_2 Y 16 Y 1510.8355 0.9943 1.00 PEPTIDE ALBU_HUMAN_UPS VPQVSTPTLVEVSR_3 Y 1 Y 1510.8355 0.9942 1.00 PEPTIDE ALBU_HUMAN_UPS YKAAFTECCQAADKAACLLPK_3 Y 2 Y 2415.1386 0.9998 1.00 PEPTIDE ALBU_HUMAN_UPS YKAAFTECCQAADK_3 Y 1 Y 1661.7178 0.9925 1.00 PEPTIDE ALBU_HUMAN_UPS YLYEIAR_2 Y 9 Y 926.4862 0.9904 1.00 PEPTIDE ALBU_HUMAN_UPS YTKKVPQVSTPTLVEVSR_3 Y 2 Y 2031.1364 0.9945 1.00 PEPTIDE ALBU_HUMAN_UPS YTKKVPQVSTPTLVEVSR_4 Y 1 Y 2031.1364 0.9998 1.00 PROTEIN 36 shuff1_SYHC_HUMAN_UPS 0.0000 0 2 1 MFFHHQGRK RGLGIDSQQFLKAEIGLK shuff1_SYHC_HUMAN_UPS P12081ups PEPTIDE shuff1_SYHC_HUMAN_UPS MFFHHQGRK_3 Y 1 N 1186.5818 0.0817 1.00 PEPTIDE shuff1_SYHC_HUMAN_UPS RGLGIDSQQFLKAEIGLK_3 Y 1 N 1972.1106 0.0249 1.00