#FILE	./MSups_15ul.prot.xml
#FILE	./MSups_15ul.prot.xml
# DATABASE	/project/marcotte/marcotte/ms/database/ms_ups2_sp_CON_shuff.fasta
# CUTOFF	PROBABILITY	0.00	FPR	0.184
# CUTOFF	PROBABILITY	0.10	FPR	0.070
# CUTOFF	PROBABILITY	0.20	FPR	0.070
# CUTOFF	PROBABILITY	0.30	FPR	0.053
# CUTOFF	PROBABILITY	0.40	FPR	0.024
# CUTOFF	PROBABILITY	0.50	FPR	0.024
# CUTOFF	PROBABILITY	0.60	FPR	0.024
# CUTOFF	PROBABILITY	0.70	FPR	0.015
# CUTOFF	PROBABILITY	0.80	FPR	0.002
# CUTOFF	PROBABILITY	0.90	FPR	0.002
# CUTOFF	PROBABILITY	0.95	FPR	0.002
# CUTOFF	PROBABILITY	0.96	FPR	0.002
# CUTOFF	PROBABILITY	0.97	FPR	0.002
# CUTOFF	PROBABILITY	0.98	FPR	0.002
# CUTOFF	PROBABILITY	0.99	FPR	0.001
# CUTOFF	PROBABILITY	1.00	FPR	0.000
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.40	0.30	0.053	0.024
# PROBABILITY CUT (0.05 FDR)	0.3103
# UPPER PROB, LOWER PROB, UPPER FPR, LOWER FPR	0.40	0.30	0.053	0.024
# PROBABILITY CUT (0.05 FDR)	0.3103
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	1847
# TOTAL NUMBER OF (CONTRIBUTING) PEPTIDE COUNTS	204
# PROTEIN	Number	Name	Probability	Contributing_spectral_counts	All_unique_peptides	No._indistinguishable_proteins	Peptides	Degenerate Proteins	Annotation
#	PEPTIDE	Protein_Name	PeptideSequence_Charge	Degenerate?	Spectral counts	Contributing?	Neutral_mass(check)	Adjusted NPS prob	Weight_(degeneracy)
# DATA
PROTEIN	1	GSTP1_HUMAN_UPS	1.0000	2	2	1	AFLASPEYVNLPINGNGKQ YISLIYTNYEAGKDDYVK	GSTP1_HUMAN_UPS	P09211ups
	PEPTIDE	GSTP1_HUMAN_UPS	AFLASPEYVNLPINGNGKQ_4	Y	1	Y	2031.0425	0.9979	1.00
	PEPTIDE	GSTP1_HUMAN_UPS	YISLIYTNYEAGKDDYVK_4	Y	1	Y	2154.0521	0.9979	1.00
PROTEIN	2	RETBP_HUMAN_UPS	0.7939	2	2	1	FSGTWYAMAK YWGVASFLQK	RETBP_HUMAN_UPS	P02753ups
	PEPTIDE	RETBP_HUMAN_UPS	FSGTWYAMAK_2	Y	1	Y	1160.5325	0.4160	1.00
	PEPTIDE	RETBP_HUMAN_UPS	YWGVASFLQK_2	Y	1	Y	1197.6182	0.6470	1.00
PROTEIN	3	CO5_HUMAN_UPS	0.9999	40	2	1	AFTECCVVASQLR CIKAFTECCVVASQLR	CO5_HUMAN_UPS	P01031ups
	PEPTIDE	CO5_HUMAN_UPS	AFTECCVVASQLR_2	Y	35	Y	1539.7175	0.9979	1.00
	PEPTIDE	CO5_HUMAN_UPS	AFTECCVVASQLR_3	Y	3	Y	1539.7175	0.8167	1.00
	PEPTIDE	CO5_HUMAN_UPS	CIKAFTECCVVASQLR_3	Y	2	Y	1940.9272	0.8362	1.00
PROTEIN	4	MYG_HUMAN_UPS	1.0000	23	4	1	DMASNYKELGFQG HGATVLTALGGILK HGATVLTALGGILKK VEADIPGHGQEVLIRLFKGHPETLEK	MYG_HUMAN_UPS	P02144ups
	PEPTIDE	MYG_HUMAN_UPS	DMASNYKELGFQG_2	Y	1	Y	1458.6449	0.7829	1.00
	PEPTIDE	MYG_HUMAN_UPS	HGATVLTALGGILKK_2	Y	1	Y	1477.8980	0.5488	1.00
	PEPTIDE	MYG_HUMAN_UPS	HGATVLTALGGILKK_3	Y	4	Y	1477.8980	0.9979	1.00
	PEPTIDE	MYG_HUMAN_UPS	HGATVLTALGGILK_2	Y	6	Y	1349.8031	0.9979	1.00
	PEPTIDE	MYG_HUMAN_UPS	HGATVLTALGGILK_3	Y	5	Y	1349.8031	0.8310	1.00
	PEPTIDE	MYG_HUMAN_UPS	VEADIPGHGQEVLIRLFKGHPETLEK_3	Y	3	Y	2911.5556	0.9189	1.00
	PEPTIDE	MYG_HUMAN_UPS	VEADIPGHGQEVLIRLFKGHPETLEK_4	Y	3	Y	2911.5556	0.9979	1.00
PROTEIN	5	EGF_HUMAN_UPS	0.9802	15	1	1	DLKWWELR	EGF_HUMAN_UPS	P01133ups
	PEPTIDE	EGF_HUMAN_UPS	DLKWWELR_2	Y	9	Y	1144.6029	0.6541	1.00
	PEPTIDE	EGF_HUMAN_UPS	DLKWWELR_3	Y	6	Y	1144.6029	0.9427	1.00
PROTEIN	6	PDGFB_HUMAN_UPS	0.9976	2	1	1	ATVTLEDHLACKCETVAAARPVT	PDGFB_HUMAN_UPS	P01127ups
	PEPTIDE	PDGFB_HUMAN_UPS	ATVTLEDHLACKCETVAAARPVT_4	Y	2	Y	2512.2415	0.9976	1.00
PROTEIN	7	HBA_HUMAN_UPS	1.0000	27	4	1	FLASVSTVLTSK MFLSFPTTK VADALTNAVAHVDDMPNALSALSDLHAHK VGAHAGEYGAEALER	HBA_HUMAN_UPS	P69905ups
	PEPTIDE	HBA_HUMAN_UPS	FLASVSTVLTSK_2	Y	4	Y	1251.7075	0.7447	1.00
	PEPTIDE	HBA_HUMAN_UPS	MFLSFPTTK_2	Y	11	Y	1070.5471	0.9313	1.00
	PEPTIDE	HBA_HUMAN_UPS	VADALTNAVAHVDDMPNALSALSDLHAHK_3	Y	1	Y	2995.4822	0.8764	1.00
	PEPTIDE	HBA_HUMAN_UPS	VADALTNAVAHVDDMPNALSALSDLHAHK_4	Y	3	Y	2995.4822	0.9979	1.00
	PEPTIDE	HBA_HUMAN_UPS	VADALTNAVAHVDDMPNALSALSDLHAHK_5	Y	3	Y	2995.4822	0.9979	1.00
	PEPTIDE	HBA_HUMAN_UPS	VGAHAGEYGAEALER_2	Y	1	Y	1528.7270	0.6298	1.00
	PEPTIDE	HBA_HUMAN_UPS	VGAHAGEYGAEALER_3	Y	4	Y	1528.7270	0.8763	1.00
PROTEIN	8	TRFE_HUMAN_UPS	1.0000	2	3	1	DLLFRDDTVCLAK NTYEKYLGEEYVKAVGNLR PVVAEFYGSKEDPQTFYYAVAVVKK	TRFE_HUMAN_UPS	P02787ups
	PEPTIDE	TRFE_HUMAN_UPS	DLLFRDDTVCLAK_3	Y	1	N	1564.7920	0.1401	1.00
	PEPTIDE	TRFE_HUMAN_UPS	NTYEKYLGEEYVKAVGNLR_4	Y	1	Y	2245.1379	0.9979	1.00
	PEPTIDE	TRFE_HUMAN_UPS	PVVAEFYGSKEDPQTFYYAVAVVKK_5	Y	1	Y	2834.4531	0.9906	1.00
PROTEIN	9	SYUG_HUMAN_UPS	0.2037	1	1	1	EQANAVSEAVVSSVNTVATK	SYUG_HUMAN_UPS	O76070ups
	PEPTIDE	SYUG_HUMAN_UPS	EQANAVSEAVVSSVNTVATK_4	Y	1	Y	2003.0171	0.2037	1.00
PROTEIN	10	UBE2C_HUMAN_UPS	1.0000	5	2	1	FLTPCYHPNVDTQGNICLDILK KYLQETYSKQVTSQEP	UBE2C_HUMAN_UPS	O00762ups
	PEPTIDE	UBE2C_HUMAN_UPS	FLTPCYHPNVDTQGNICLDILK_4	Y	2	Y	2617.2670	0.9979	1.00
	PEPTIDE	UBE2C_HUMAN_UPS	KYLQETYSKQVTSQEP_4	Y	3	Y	1927.9527	0.9979	1.00
PROTEIN	11	NQO1_HUMAN_UPS	0.0000	0	1	1	IQILEGWK	NQO1_HUMAN_UPS	P15559ups
	PEPTIDE	NQO1_HUMAN_UPS	IQILEGWK_2	Y	1	N	985.5597	0.0286	1.00
PROTEIN	12	PPIA_HUMAN_UPS	1.0000	43	7	1	EGMNIVEAMER FEDENFILK IIPGFMCQGGDFTR TEWLDGKHVVFGK VKEGMNIVEAMER VSFELFADKVPK VSFELFADKVPKTAENFR	PPIA_HUMAN_UPS	P62937ups
	PEPTIDE	PPIA_HUMAN_UPS	EGMNIVEAMER_2	Y	2	Y	1277.5744	0.9045	1.00
	PEPTIDE	PPIA_HUMAN_UPS	FEDENFILK_2	Y	4	Y	1153.5655	0.9353	1.00
	PEPTIDE	PPIA_HUMAN_UPS	IIPGFMCQGGDFTR_2	Y	1	Y	1597.7382	0.9282	1.00
	PEPTIDE	PPIA_HUMAN_UPS	TEWLDGKHVVFGK_3	Y	1	Y	1514.7882	0.6233	1.00
	PEPTIDE	PPIA_HUMAN_UPS	VKEGMNIVEAMER_2	Y	14	Y	1504.7378	0.7877	1.00
	PEPTIDE	PPIA_HUMAN_UPS	VKEGMNIVEAMER_3	Y	8	Y	1504.7378	0.5069	1.00
	PEPTIDE	PPIA_HUMAN_UPS	VSFELFADKVPKTAENFR_4	Y	4	Y	2097.0895	0.9979	1.00
	PEPTIDE	PPIA_HUMAN_UPS	VSFELFADKVPK_2	Y	4	Y	1378.7497	0.7651	1.00
	PEPTIDE	PPIA_HUMAN_UPS	VSFELFADKVPK_3	Y	5	Y	1378.7497	0.9585	1.00
PROTEIN	13	shuff1_CRP_HUMAN_UPS	0.0000	0	1	1	YGTLSPVGHNATELDWVATTVGPK	shuff1_CRP_HUMAN_UPS	P02741ups
	PEPTIDE	shuff1_CRP_HUMAN_UPS	YGTLSPVGHNATELDWVATTVGPK_3	Y	1	N	2512.2598	0.1159	1.00
PROTEIN	14	shuff1_UB2E1_HUMAN_UPS	0.9976	1	1	1	TSDYTSSPVRGSVSGLPQGR	shuff1_UB2E1_HUMAN_UPS	P51965ups
	PEPTIDE	shuff1_UB2E1_HUMAN_UPS	TSDYTSSPVRGSVSGLPQGR_4	Y	1	Y	2050.0079	0.9976	1.00
PROTEIN	15	shuff1_CATA_HUMAN_UPS	0.9994	4	3	1	AHTDVIFSSVNYSAVLDLGNDAGRE TEHHSNTTYAFKNRR VINPGKIIFTDAEEATR	shuff1_CATA_HUMAN_UPS	P04040ups
	PEPTIDE	shuff1_CATA_HUMAN_UPS	AHTDVIFSSVNYSAVLDLGNDAGRE_4	Y	2	Y	2649.2671	0.9963	1.00
	PEPTIDE	shuff1_CATA_HUMAN_UPS	TEHHSNTTYAFKNRR_3	Y	1	Y	1860.8979	0.5193	1.00
	PEPTIDE	shuff1_CATA_HUMAN_UPS	VINPGKIIFTDAEEATR_3	Y	1	Y	1872.9945	0.6709	1.00
PROTEIN	16	shuff1_NQO1_HUMAN_UPS	0.9976	1	2	1	AESDRSFQLLSLPDPMEFNFPSKEK MKAESDRSFQLLSLPDPMEFNFPSK	shuff1_NQO1_HUMAN_UPS	P15559ups
	PEPTIDE	shuff1_NQO1_HUMAN_UPS	AESDRSFQLLSLPDPMEFNFPSKEK_4	Y	1	N	2911.4062	0.0364	1.00
	PEPTIDE	shuff1_NQO1_HUMAN_UPS	MKAESDRSFQLLSLPDPMEFNFPSK_4	Y	1	Y	2913.4041	0.9976	1.00
PROTEIN	17	CRP_HUMAN_UPS	0.7222	1	1	1	KAFVFPKESDTSYVSLK	CRP_HUMAN_UPS	P02741ups
	PEPTIDE	CRP_HUMAN_UPS	KAFVFPKESDTSYVSLK_3	Y	1	Y	1945.0197	0.7222	1.00
PROTEIN	18	shuff1_NQO2_HUMAN_UPS	0.9876	1	1	1	HWADAAQEDFTKKEDIENFQITAK	shuff1_NQO2_HUMAN_UPS	P16083ups
	PEPTIDE	shuff1_NQO2_HUMAN_UPS	HWADAAQEDFTKKEDIENFQITAK_5	Y	1	Y	2834.3511	0.9876	1.00
PROTEIN	19	UBC9_HUMAN_UPS	0.9882	3	3	1	DHPFGFVAVPTK GTPWEGGLFK MLFKDDYPSSPPK	UBC9_HUMAN_UPS	P63279ups
	PEPTIDE	UBC9_HUMAN_UPS	DHPFGFVAVPTK_2	Y	1	N	1313.6768	0.0287	1.00
	PEPTIDE	UBC9_HUMAN_UPS	GTPWEGGLFK_2	Y	1	Y	1090.5447	0.8149	1.00
	PEPTIDE	UBC9_HUMAN_UPS	MLFKDDYPSSPPK_3	Y	2	Y	1523.7330	0.9365	1.00
PROTEIN	20	shuff1_PRDX1_HUMAN_UPS	0.9976	1	1	1	GAMLPTVDSTTLSQFFIIFAK	shuff1_PRDX1_HUMAN_UPS	Q06830ups
	PEPTIDE	shuff1_PRDX1_HUMAN_UPS	GAMLPTVDSTTLSQFFIIFAK_4	Y	1	Y	2286.1970	0.9976	1.00
PROTEIN	21	CAH2_HUMAN_UPS	1.0000	243	12	1	AVQQPDGLAVLGIFLK EPISVSSEQVLK GGPLDGTYR HNGPEHWHKDFPIAKGER KYAAELHLVHWNTKYGDFGK LIQFHFHWGSLDGQGSEHTVDKK QSPVDIDTHTAK QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR SADFTNFDPR YAAELHLVHWNTK YAAELHLVHWNTKYGDFGK YDPSLKPLSVSYDQATSLR	CAH2_HUMAN_UPS	P00918ups
	PEPTIDE	CAH2_HUMAN_UPS	AVQQPDGLAVLGIFLK_2	Y	69	Y	1667.9610	0.9991	1.00
	PEPTIDE	CAH2_HUMAN_UPS	AVQQPDGLAVLGIFLK_3	Y	3	Y	1667.9610	0.9619	1.00
	PEPTIDE	CAH2_HUMAN_UPS	EPISVSSEQVLK_2	Y	1	N	1314.7031	0.0731	1.00
	PEPTIDE	CAH2_HUMAN_UPS	GGPLDGTYR_2	Y	6	Y	934.4508	0.9716	1.00
	PEPTIDE	CAH2_HUMAN_UPS	HNGPEHWHKDFPIAKGER_3	Y	1	Y	2154.0508	0.5649	1.00
	PEPTIDE	CAH2_HUMAN_UPS	KYAAELHLVHWNTKYGDFGK_4	Y	1	Y	2376.2015	0.9991	1.00
	PEPTIDE	CAH2_HUMAN_UPS	KYAAELHLVHWNTKYGDFGK_5	Y	1	Y	2376.2015	0.9984	1.00
	PEPTIDE	CAH2_HUMAN_UPS	LIQFHFHWGSLDGQGSEHTVDKK_4	Y	1	Y	2665.3037	0.9991	1.00
	PEPTIDE	CAH2_HUMAN_UPS	LIQFHFHWGSLDGQGSEHTVDKK_5	Y	2	Y	2665.3037	0.9989	1.00
	PEPTIDE	CAH2_HUMAN_UPS	QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR_4	Y	8	Y	3431.7209	0.9991	1.00
	PEPTIDE	CAH2_HUMAN_UPS	QSPVDIDTHTAKYDPSLKPLSVSYDQATSLR_5	Y	8	Y	3431.7209	0.9986	1.00
	PEPTIDE	CAH2_HUMAN_UPS	QSPVDIDTHTAK_3	Y	4	Y	1310.6466	0.9273	1.00
	PEPTIDE	CAH2_HUMAN_UPS	SADFTNFDPR_2	Y	22	Y	1168.5149	0.9761	1.00
	PEPTIDE	CAH2_HUMAN_UPS	YAAELHLVHWNTKYGDFGK_3	Y	3	Y	2248.1065	0.9991	1.00
	PEPTIDE	CAH2_HUMAN_UPS	YAAELHLVHWNTKYGDFGK_4	Y	5	Y	2248.1065	0.9991	1.00
	PEPTIDE	CAH2_HUMAN_UPS	YAAELHLVHWNTKYGDFGK_5	Y	1	Y	2248.1065	0.9988	1.00
	PEPTIDE	CAH2_HUMAN_UPS	YAAELHLVHWNTK_2	Y	13	Y	1580.8100	0.9991	1.00
	PEPTIDE	CAH2_HUMAN_UPS	YAAELHLVHWNTK_4	Y	17	Y	1580.8100	0.9991	1.00
	PEPTIDE	CAH2_HUMAN_UPS	YDPSLKPLSVSYDQATSLR_2	Y	13	Y	2139.0848	0.8818	1.00
	PEPTIDE	CAH2_HUMAN_UPS	YDPSLKPLSVSYDQATSLR_3	Y	65	Y	2139.0848	0.9824	1.00
PROTEIN	22	KCRM_HUMAN_UPS	1.0000	18	7	1	FKLNYKPEEEYPDLSK LNYKPEEEYPDLSK LSVEALNSLTGEFK LSVEALNSLTGEFKGK PVSPLLLASGMARDWPDAR SFLVWVNEEDHLR VLTLELYK	KCRM_HUMAN_UPS	P06732ups
	PEPTIDE	KCRM_HUMAN_UPS	FKLNYKPEEEYPDLSK_4	Y	2	Y	1998.9939	0.9979	1.00
	PEPTIDE	KCRM_HUMAN_UPS	LNYKPEEEYPDLSK_3	Y	3	Y	1723.8305	0.9415	1.00
	PEPTIDE	KCRM_HUMAN_UPS	LSVEALNSLTGEFKGK_3	Y	1	Y	1691.9094	0.8477	1.00
	PEPTIDE	KCRM_HUMAN_UPS	LSVEALNSLTGEFKGK_4	Y	2	Y	1691.9094	0.9979	1.00
	PEPTIDE	KCRM_HUMAN_UPS	LSVEALNSLTGEFK_2	Y	1	Y	1506.7930	0.9979	1.00
	PEPTIDE	KCRM_HUMAN_UPS	PVSPLLLASGMARDWPDAR_3	Y	1	Y	2051.0622	0.5851	1.00
	PEPTIDE	KCRM_HUMAN_UPS	PVSPLLLASGMARDWPDAR_4	Y	1	Y	2051.0622	0.9979	1.00
	PEPTIDE	KCRM_HUMAN_UPS	SFLVWVNEEDHLR_2	Y	3	Y	1642.8104	0.8919	1.00
	PEPTIDE	KCRM_HUMAN_UPS	SFLVWVNEEDHLR_3	Y	2	Y	1642.8104	0.8461	1.00
	PEPTIDE	KCRM_HUMAN_UPS	VLTLELYK_2	Y	2	Y	977.5797	0.8920	1.00
PROTEIN	23	LEP_HUMAN_UPS	1.0000	146	4	1	DLLHVLAFSK INDISHTQSVSSK NVIQISNDLENLR QKVTGLDFIPGLHPILTLSK	LEP_HUMAN_UPS	P41159ups
	PEPTIDE	LEP_HUMAN_UPS	DLLHVLAFSK_2	Y	34	Y	1141.6495	0.9446	1.00
	PEPTIDE	LEP_HUMAN_UPS	DLLHVLAFSK_3	Y	9	Y	1141.6495	0.8934	1.00
	PEPTIDE	LEP_HUMAN_UPS	INDISHTQSVSSK_3	Y	1	Y	1414.7052	0.7567	1.00
	PEPTIDE	LEP_HUMAN_UPS	NVIQISNDLENLR_2	Y	61	Y	1526.8053	0.9288	1.00
	PEPTIDE	LEP_HUMAN_UPS	NVIQISNDLENLR_3	Y	8	Y	1526.8053	0.9000	1.00
	PEPTIDE	LEP_HUMAN_UPS	QKVTGLDFIPGLHPILTLSK_3	Y	2	Y	2176.2620	0.9579	1.00
	PEPTIDE	LEP_HUMAN_UPS	QKVTGLDFIPGLHPILTLSK_4	Y	31	Y	2176.2620	0.9979	1.00
PROTEIN	24	SUMO1_HUMAN_UPS	1.0000	20	9	1	AEISMLEGAVLDIR DFETLKVDFLSK ERAEISMLEGAVLDIR IAYSKDFETLKVDFLSK IEAIPQIDKYLK LLLEYLEEK LLLEYLEEKYEEHLYER MSPILGYWK RIEAIPQIDKYLK	SUMO1_HUMAN_UPS	P63165ups
	PEPTIDE	SUMO1_HUMAN_UPS	AEISMLEGAVLDIR_2	Y	5	Y	1515.7967	0.9446	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	AEISMLEGAVLDIR_3	Y	1	N	1515.7967	0.0857	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	DFETLKVDFLSK_2	Y	2	Y	1440.7500	0.7753	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	DFETLKVDFLSK_3	Y	1	Y	1440.7500	0.3769	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	ERAEISMLEGAVLDIR_3	Y	3	Y	1800.9404	0.6044	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	IAYSKDFETLKVDFLSK_3	Y	3	Y	2003.0615	0.9577	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	IAYSKDFETLKVDFLSK_4	Y	1	Y	2003.0615	0.9979	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	IEAIPQIDKYLK_3	Y	1	N	1429.8181	0.0842	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	LLLEYLEEKYEEHLYER_3	Y	1	Y	2268.1314	0.9571	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	LLLEYLEEK_2	Y	1	Y	1148.6329	0.3829	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	MSPILGYWK_2	Y	1	Y	1093.5630	0.8042	1.00
	PEPTIDE	SUMO1_HUMAN_UPS	RIEAIPQIDKYLK_3	Y	2	Y	1585.9192	0.9069	1.00
PROTEIN	25	RASH_HUMAN_UPS	0.9976	4	1	1	SFEDIHQYREQIK	RASH_HUMAN_UPS	P01112ups
	PEPTIDE	RASH_HUMAN_UPS	SFEDIHQYREQIK_4	Y	4	Y	1691.8267	0.9976	1.00
PROTEIN	26	shuff1_HBA_HUMAN_UPS	0.0000	0	1	1	DSYVCDKFDLGLHVENALFVTAALGSK	shuff1_HBA_HUMAN_UPS	P69905ups
	PEPTIDE	shuff1_HBA_HUMAN_UPS	DSYVCDKFDLGLHVENALFVTAALGSK_5	Y	1	N	2968.4641	0.1239	1.00
PROTEIN	27	BID_HUMAN_UPS	0.9976	5	1	1	NRDLATALEQLLQAYPRDMEK	BID_HUMAN_UPS	P55957ups
	PEPTIDE	BID_HUMAN_UPS	NRDLATALEQLLQAYPRDMEK_4	Y	5	Y	2474.2588	0.9976	1.00
PROTEIN	28	HBB_HUMAN_UPS	1.0000	42	8	1	EFTPPVQAAYQK GTFATLSELHCDK KVLGAFSDGLAHLDNLK LLGNVLVCVLAHHFGK LLVVYPWTQR SAVTALWGK VNVDEVGGEALGR VVAGVANALAHK	HBB_HUMAN_UPS	P68871ups
	PEPTIDE	HBB_HUMAN_UPS	EFTPPVQAAYQK_2	Y	5	Y	1377.6929	0.9672	1.00
	PEPTIDE	HBB_HUMAN_UPS	EFTPPVQAAYQK_3	Y	3	Y	1377.6929	0.7883	1.00
	PEPTIDE	HBB_HUMAN_UPS	GTFATLSELHCDK_2	Y	2	Y	1477.6872	0.9537	1.00
	PEPTIDE	HBB_HUMAN_UPS	GTFATLSELHCDK_3	Y	1	Y	1477.6872	0.3591	1.00
	PEPTIDE	HBB_HUMAN_UPS	KVLGAFSDGLAHLDNLK_2	Y	2	Y	1796.9785	0.9988	1.00
	PEPTIDE	HBB_HUMAN_UPS	KVLGAFSDGLAHLDNLK_3	Y	10	Y	1796.9785	0.9764	1.00
	PEPTIDE	HBB_HUMAN_UPS	KVLGAFSDGLAHLDNLK_4	Y	2	Y	1796.9785	0.9988	1.00
	PEPTIDE	HBB_HUMAN_UPS	LLGNVLVCVLAHHFGK_3	Y	2	Y	1775.9869	0.9457	1.00
	PEPTIDE	HBB_HUMAN_UPS	LLVVYPWTQR_2	Y	8	Y	1273.7183	0.9680	1.00
	PEPTIDE	HBB_HUMAN_UPS	SAVTALWGK_2	Y	3	Y	931.5127	0.9680	1.00
	PEPTIDE	HBB_HUMAN_UPS	VNVDEVGGEALGR_2	Y	2	Y	1313.6575	0.9671	1.00
	PEPTIDE	HBB_HUMAN_UPS	VVAGVANALAHK_2	Y	1	Y	1148.6666	0.9198	1.00
	PEPTIDE	HBB_HUMAN_UPS	VVAGVANALAHK_3	Y	1	Y	1148.6666	0.4492	1.00
PROTEIN	29	UB2E1_HUMAN_UPS	0.9976	3	1	1	ASTSSSSSSSSNQQTEKETNTPKK	UB2E1_HUMAN_UPS	P51965ups
	PEPTIDE	UB2E1_HUMAN_UPS	ASTSSSSSSSSNQQTEKETNTPKK_4	Y	3	Y	2500.1525	0.9976	1.00
PROTEIN	30	TAU_HUMAN_UPS	0.0000	0	1	1	IGSTENLKHQPGGGK	TAU_HUMAN_UPS	P10636ups
	PEPTIDE	TAU_HUMAN_UPS	IGSTENLKHQPGGGK_3	Y	1	N	1521.7900	0.0945	1.00
PROTEIN	31	CYC_HUMAN_UPS	0.6298	3	1	1	IFIMKCSQCHTVEK	CYC_HUMAN_UPS	P99999ups
	PEPTIDE	CYC_HUMAN_UPS	IFIMKCSQCHTVEK_3	Y	3	Y	1779.8471	0.6298	1.00
PROTEIN	32	shuff1_ANT3_HUMAN_UPS	0.0000	0	1	1	PNAESYFAPEAKEAVSSVKFK	shuff1_ANT3_HUMAN_UPS	P01008ups
	PEPTIDE	shuff1_ANT3_HUMAN_UPS	PNAESYFAPEAKEAVSSVKFK_3	Y	1	N	2298.1532	0.0220	1.00
PROTEIN	33	CAH1_HUMAN_UPS	1.0000	262	15	1	ADGLAVIGVLMK EIINVGHSFHVNFEDNDNR EIINVGHSFHVNFEDNDNRSVLK ESISVSSEQLAQFR GGPFSDSYR HDTSLKPISVSYNPATAK LFQFHFHWGSTNEHGSEHTVDGVK LYPIANGNNQSPVDIK LYPIANGNNQSPVDIKTSETK SLLSNVEGDNAVPMQHNNR SLLSNVEGDNAVPMQHNNRPTQPLK SLLSNVEGDNAVPMQHNNRPTQPLKGR TSETKHDTSLKPISVSYNPATAK YSAELHVAHWNSAK YSSLAEAASK	CAH1_HUMAN_UPS	P00915ups
	PEPTIDE	CAH1_HUMAN_UPS	ADGLAVIGVLMK_2	Y	42	Y	1185.6791	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	ADGLAVIGVLMK_3	Y	3	Y	1185.6791	0.9812	1.00
	PEPTIDE	CAH1_HUMAN_UPS	EIINVGHSFHVNFEDNDNRSVLK_4	Y	8	Y	2682.3150	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	EIINVGHSFHVNFEDNDNRSVLK_5	Y	2	Y	2682.3150	0.9986	1.00
	PEPTIDE	CAH1_HUMAN_UPS	EIINVGHSFHVNFEDNDNR_3	Y	1	Y	2255.0356	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	EIINVGHSFHVNFEDNDNR_4	Y	4	Y	2255.0356	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	ESISVSSEQLAQFR_2	Y	20	Y	1579.7842	0.9886	1.00
	PEPTIDE	CAH1_HUMAN_UPS	ESISVSSEQLAQFR_3	Y	4	Y	1579.7842	0.9820	1.00
	PEPTIDE	CAH1_HUMAN_UPS	GGPFSDSYR_2	Y	2	N	984.4301	0.1295	1.00
	PEPTIDE	CAH1_HUMAN_UPS	HDTSLKPISVSYNPATAK_3	Y	9	Y	1928.0003	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	HDTSLKPISVSYNPATAK_4	Y	7	Y	1928.0003	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	LFQFHFHWGSTNEHGSEHTVDGVK_4	Y	8	Y	2795.2841	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	LFQFHFHWGSTNEHGSEHTVDGVK_5	Y	5	Y	2795.2841	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	LYPIANGNNQSPVDIKTSETK_3	Y	1	Y	2288.1648	0.9842	1.00
	PEPTIDE	CAH1_HUMAN_UPS	LYPIANGNNQSPVDIK_2	Y	64	Y	1741.8999	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	LYPIANGNNQSPVDIK_3	Y	10	Y	1741.8999	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	SLLSNVEGDNAVPMQHNNRPTQPLKGR_3	Y	4	Y	2971.5046	0.9911	1.00
	PEPTIDE	CAH1_HUMAN_UPS	SLLSNVEGDNAVPMQHNNRPTQPLKGR_4	Y	10	Y	2971.5046	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	SLLSNVEGDNAVPMQHNNRPTQPLKGR_5	Y	14	Y	2971.5046	0.9995	1.00
	PEPTIDE	CAH1_HUMAN_UPS	SLLSNVEGDNAVPMQHNNRPTQPLK_3	Y	8	Y	2758.3821	0.9916	1.00
	PEPTIDE	CAH1_HUMAN_UPS	SLLSNVEGDNAVPMQHNNRPTQPLK_4	Y	18	Y	2758.3821	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	SLLSNVEGDNAVPMQHNNR_3	Y	1	Y	2093.9912	0.9471	1.00
	PEPTIDE	CAH1_HUMAN_UPS	TSETKHDTSLKPISVSYNPATAK_3	Y	1	Y	2474.2653	0.9881	1.00
	PEPTIDE	CAH1_HUMAN_UPS	TSETKHDTSLKPISVSYNPATAK_4	Y	12	Y	2474.2653	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	TSETKHDTSLKPISVSYNPATAK_5	Y	3	Y	2474.2653	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	YSAELHVAHWNSAK_2	Y	1	Y	1611.7794	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	YSAELHVAHWNSAK_4	Y	1	Y	1611.7794	0.9994	1.00
	PEPTIDE	CAH1_HUMAN_UPS	YSSLAEAASK_2	Y	1	Y	1025.5029	0.9768	1.00
PROTEIN	34	SYHC_HUMAN_UPS	1.0000	9	4	1	EEVDVRREDLVEEIK HGAEVIDTPVFELK ILDGMFAICGVSDSK YDLTVPFAR	SYHC_HUMAN_UPS	P12081ups
	PEPTIDE	SYHC_HUMAN_UPS	EEVDVRREDLVEEIK_4	Y	1	Y	1856.9480	0.9969	1.00
	PEPTIDE	SYHC_HUMAN_UPS	HGAEVIDTPVFELK_2	Y	4	Y	1553.8090	0.9432	1.00
	PEPTIDE	SYHC_HUMAN_UPS	HGAEVIDTPVFELK_3	Y	1	N	1553.8090	0.1734	1.00
	PEPTIDE	SYHC_HUMAN_UPS	ILDGMFAICGVSDSK_2	Y	2	Y	1611.7637	0.9979	1.00
	PEPTIDE	SYHC_HUMAN_UPS	YDLTVPFAR_2	Y	2	Y	1080.5604	0.9390	1.00
PROTEIN	35	shuff1_LYSC_HUMAN_UPS	0.3405	1	1	1	VVHEWVKANRQQILNVK	shuff1_LYSC_HUMAN_UPS	P61626ups
	PEPTIDE	shuff1_LYSC_HUMAN_UPS	VVHEWVKANRQQILNVK_3	Y	1	Y	2060.1643	0.3405	1.00
PROTEIN	36	CYB5_HUMAN_UPS	1.0000	3	2	1	EMSKTFIIGELHPDDRPK TFIIGELHPDDRPK	CYB5_HUMAN_UPS	P00167ups
	PEPTIDE	CYB5_HUMAN_UPS	EMSKTFIIGELHPDDRPK_5	Y	2	Y	2112.0674	0.9975	1.00
	PEPTIDE	CYB5_HUMAN_UPS	TFIIGELHPDDRPK_4	Y	1	Y	1636.8573	0.9979	1.00
PROTEIN	37	shuff1_ALBU_HUMAN_UPS	0.0000	0	1	1	LCMLDHLETLVVGYVAHK	shuff1_ALBU_HUMAN_UPS	P02768ups
	PEPTIDE	shuff1_ALBU_HUMAN_UPS	LCMLDHLETLVVGYVAHK_4	Y	1	N	2097.0751	0.0234	1.00
PROTEIN	38	CATG_HUMAN_UPS	0.9971	1	1	1	PHSRPYMAYLQIQSPAGQSR	CATG_HUMAN_UPS	P08311ups
	PEPTIDE	CATG_HUMAN_UPS	PHSRPYMAYLQIQSPAGQSR_4	Y	1	Y	2286.1328	0.9971	1.00
PROTEIN	39	shuff1_TRFL_HUMAN_UPS	0.9997	5	3	1	EGIGSVKLVLEKPR KTDLDNLDVADSCLLSKFPR TYVSPNTWALECVDVPSGQPARFSIR	shuff1_TRFL_HUMAN_UPS	P02788ups
	PEPTIDE	shuff1_TRFL_HUMAN_UPS	EGIGSVKLVLEKPR_3	Y	2	Y	1523.9035	0.5402	1.00
	PEPTIDE	shuff1_TRFL_HUMAN_UPS	KTDLDNLDVADSCLLSKFPR_4	Y	2	Y	2306.1577	0.9979	1.00
	PEPTIDE	shuff1_TRFL_HUMAN_UPS	TYVSPNTWALECVDVPSGQPARFSIR_5	Y	1	Y	2949.4444	0.7249	1.00
PROTEIN	40	NQO2_HUMAN_UPS	1.0000	4	3	1	GMVAAWSQRLQTIWK LQTIWKEEPIPCTAHWHFGQ VLAPQISFAPEIASEEER	NQO2_HUMAN_UPS	P16083ups
	PEPTIDE	NQO2_HUMAN_UPS	GMVAAWSQRLQTIWK_4	Y	1	Y	1773.9348	0.9979	1.00
	PEPTIDE	NQO2_HUMAN_UPS	LQTIWKEEPIPCTAHWHFGQ_4	Y	1	Y	2477.1951	0.9979	1.00
	PEPTIDE	NQO2_HUMAN_UPS	VLAPQISFAPEIASEEER_2	Y	2	Y	1985.0106	0.9979	1.00
PROTEIN	41	shuff1_THIO_HUMAN_UPS	0.9985	2	2	1	QQNAAFNEKLK QQNAAFNEKLKSVEHDVVK	shuff1_THIO_HUMAN_UPS	P10599ups
	PEPTIDE	shuff1_THIO_HUMAN_UPS	QQNAAFNEKLKSVEHDVVK_4	Y	1	Y	2183.1335	0.9976	1.00
	PEPTIDE	shuff1_THIO_HUMAN_UPS	QQNAAFNEKLK_3	Y	1	Y	1289.6728	0.3653	1.00
PROTEIN	42	shuff1_SODC_HUMAN_UPS	0.9794	1	1	1	AVNGVDTKGIGCAGLVPTHGGFVGNAAGSK	shuff1_SODC_HUMAN_UPS	P00441ups
	PEPTIDE	shuff1_SODC_HUMAN_UPS	AVNGVDTKGIGCAGLVPTHGGFVGNAAGSK_4	Y	1	Y	2810.4134	0.9794	1.00
PROTEIN	43	PRDX1_HUMAN_UPS	1.0000	48	13	1	ATAVMPDGQFK ATAVMPDGQFKDISLSDYKGK GLFIIDDK KLNCQVIGASVDSHFCHLAWVNTPK KLNCQVIGASVDSHFCHLAWVNTPKK KQGGLGPMNIPLVSDPK KQGGLGPMNIPLVSDPKR LNCQVIGASVDSHFCHLAWVNTPKK LVQAFQFTDK QGGLGPMNIPLVSDPK QGGLGPMNIPLVSDPKR QITVNDLPVGR TIAQDYGVLKADEGISFR	PRDX1_HUMAN_UPS	Q06830ups
	PEPTIDE	PRDX1_HUMAN_UPS	ATAVMPDGQFKDISLSDYKGK_3	Y	1	Y	2270.1253	0.9635	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	ATAVMPDGQFKDISLSDYKGK_4	Y	2	Y	2270.1253	0.9988	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	ATAVMPDGQFK_2	Y	1	Y	1163.5645	0.8440	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	GLFIIDDK_2	Y	3	Y	919.5015	0.9680	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	KLNCQVIGASVDSHFCHLAWVNTPKK_5	Y	2	Y	3008.5114	0.7938	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	KLNCQVIGASVDSHFCHLAWVNTPK_4	Y	3	Y	2880.4164	0.9988	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	KLNCQVIGASVDSHFCHLAWVNTPK_5	Y	2	Y	2880.4164	0.9755	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	KQGGLGPMNIPLVSDPKR_3	Y	2	Y	1906.0459	0.9763	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	KQGGLGPMNIPLVSDPK_3	Y	1	Y	1749.9447	0.9688	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	LNCQVIGASVDSHFCHLAWVNTPKK_4	Y	4	Y	2880.4164	0.9988	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	LNCQVIGASVDSHFCHLAWVNTPKK_5	Y	5	Y	2880.4164	0.9988	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	LVQAFQFTDK_2	Y	3	Y	1195.6237	0.9988	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	QGGLGPMNIPLVSDPKR_3	Y	4	Y	1777.9509	0.9753	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	QGGLGPMNIPLVSDPK_2	Y	6	Y	1621.8498	0.9624	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	QITVNDLPVGR_2	Y	4	Y	1210.6670	0.9585	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	QITVNDLPVGR_3	Y	1	Y	1210.6670	0.5600	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	TIAQDYGVLKADEGISFR_2	Y	2	Y	1982.0109	0.9988	1.00
	PEPTIDE	PRDX1_HUMAN_UPS	TIAQDYGVLKADEGISFR_3	Y	2	Y	1982.0109	0.9502	1.00
PROTEIN	44	shuff1_UBE2C_HUMAN_UPS	0.9981	2	1	1	QDRHQWPGIVGFGKHSLCPLSAK	shuff1_UBE2C_HUMAN_UPS	O00762ups
	PEPTIDE	shuff1_UBE2C_HUMAN_UPS	QDRHQWPGIVGFGKHSLCPLSAK_4	Y	1	Y	2617.3336	0.9976	1.00
	PEPTIDE	shuff1_UBE2C_HUMAN_UPS	QDRHQWPGIVGFGKHSLCPLSAK_5	Y	1	Y	2617.3336	0.2237	1.00
PROTEIN	45	CATA_HUMAN_UPS	1.0000	70	21	1	AAQKADVLTTGAGNPVGDKLNVITVGPR ADVLTTGAGNPVGDKLNVITVGPR AFYVNVLNEEQR AFYVNVLNEEQRK DAQIFIQK DPILFPSFIHSQK DPILFPSFIHSQKR FNTANDDNVTQVR GAGAFGYFEVTHDITK GAGAFGYFEVTHDITKYSK GPLLVQDVVFTDEMAHFDR GPLLVQDVVFTDEMAHFDRER LCENIAGHLKDAQIFIQK LCENIAGHLKDAQIFIQKK LFAYPDTHR LGPNYLHIPVNCPYR LSQEDPDYGIR LVNANGEAVYCK NAIHTFVQSGSHLAAR NFTEVHPDYGSHIQALLDK NFTEVHPDYGSHIQALLDKYNAEKPK	CATA_HUMAN_UPS	P04040ups
	PEPTIDE	CATA_HUMAN_UPS	AAQKADVLTTGAGNPVGDKLNVITVGPR_3	Y	2	Y	2761.5086	0.9866	1.00
	PEPTIDE	CATA_HUMAN_UPS	AAQKADVLTTGAGNPVGDKLNVITVGPR_4	Y	2	Y	2761.5086	0.9991	1.00
	PEPTIDE	CATA_HUMAN_UPS	ADVLTTGAGNPVGDKLNVITVGPR_3	Y	5	Y	2363.2809	0.9870	1.00
	PEPTIDE	CATA_HUMAN_UPS	ADVLTTGAGNPVGDKLNVITVGPR_4	Y	1	Y	2363.2809	0.9994	1.00
	PEPTIDE	CATA_HUMAN_UPS	AFYVNVLNEEQRK_2	Y	1	Y	1608.8260	0.9223	1.00
	PEPTIDE	CATA_HUMAN_UPS	AFYVNVLNEEQRK_3	Y	1	Y	1608.8260	0.8029	1.00
	PEPTIDE	CATA_HUMAN_UPS	AFYVNVLNEEQR_2	Y	1	Y	1480.7310	0.9801	1.00
	PEPTIDE	CATA_HUMAN_UPS	DAQIFIQK_2	Y	1	N	961.5233	0.0868	1.00
	PEPTIDE	CATA_HUMAN_UPS	DPILFPSFIHSQKR_3	Y	2	Y	1683.9097	0.7708	1.00
	PEPTIDE	CATA_HUMAN_UPS	DPILFPSFIHSQK_2	Y	2	Y	1527.8086	0.8962	1.00
	PEPTIDE	CATA_HUMAN_UPS	DPILFPSFIHSQK_3	Y	2	Y	1527.8086	0.9600	1.00
	PEPTIDE	CATA_HUMAN_UPS	FNTANDDNVTQVR_2	Y	1	Y	1492.6906	0.9569	1.00
	PEPTIDE	CATA_HUMAN_UPS	GAGAFGYFEVTHDITKYSK_3	Y	1	Y	2090.0109	0.6069	1.00
	PEPTIDE	CATA_HUMAN_UPS	GAGAFGYFEVTHDITK_2	Y	3	Y	1711.8206	0.9823	1.00
	PEPTIDE	CATA_HUMAN_UPS	GAGAFGYFEVTHDITK_3	Y	5	Y	1711.8206	0.9155	1.00
	PEPTIDE	CATA_HUMAN_UPS	GPLLVQDVVFTDEMAHFDRER_4	Y	4	Y	2473.2060	0.9994	1.00
	PEPTIDE	CATA_HUMAN_UPS	GPLLVQDVVFTDEMAHFDR_2	Y	2	Y	2188.0623	0.9994	1.00
	PEPTIDE	CATA_HUMAN_UPS	LCENIAGHLKDAQIFIQKK_3	Y	2	Y	2225.1991	0.9870	1.00
	PEPTIDE	CATA_HUMAN_UPS	LCENIAGHLKDAQIFIQKK_4	Y	4	Y	2225.1991	0.9991	1.00
	PEPTIDE	CATA_HUMAN_UPS	LCENIAGHLKDAQIFIQK_4	Y	6	Y	2097.1041	0.9991	1.00
	PEPTIDE	CATA_HUMAN_UPS	LFAYPDTHR_3	Y	2	Y	1118.5509	0.9322	1.00
	PEPTIDE	CATA_HUMAN_UPS	LGPNYLHIPVNCPYR_2	Y	2	Y	1811.9141	0.9701	1.00
	PEPTIDE	CATA_HUMAN_UPS	LGPNYLHIPVNCPYR_3	Y	6	Y	1811.9141	0.9694	1.00
	PEPTIDE	CATA_HUMAN_UPS	LSQEDPDYGIR_2	Y	1	Y	1291.6044	0.9331	1.00
	PEPTIDE	CATA_HUMAN_UPS	LVNANGEAVYCK_2	Y	1	Y	1336.6446	0.9554	1.00
	PEPTIDE	CATA_HUMAN_UPS	NAIHTFVQSGSHLAAR_3	Y	2	Y	1707.8805	0.9593	1.00
	PEPTIDE	CATA_HUMAN_UPS	NFTEVHPDYGSHIQALLDKYNAEKPK_4	Y	2	Y	3013.4934	0.9994	1.00
	PEPTIDE	CATA_HUMAN_UPS	NFTEVHPDYGSHIQALLDKYNAEKPK_5	Y	5	Y	3013.4934	0.9990	1.00
	PEPTIDE	CATA_HUMAN_UPS	NFTEVHPDYGSHIQALLDK_3	Y	2	Y	2183.0647	0.9361	1.00
PROTEIN	46	UBIQ_HUMAN_UPS	1.0000	17	4	1	QLEDGRTLSDYNIQKESTLHLVLR TITLEVEPSDTIENVKAK TLSDYNIQK TLSDYNIQKESTLHLVLR	UBIQ_HUMAN_UPS	P62988ups
	PEPTIDE	UBIQ_HUMAN_UPS	QLEDGRTLSDYNIQKESTLHLVLR_4	Y	2	Y	2827.4828	0.9979	1.00
	PEPTIDE	UBIQ_HUMAN_UPS	TITLEVEPSDTIENVKAK_3	Y	3	Y	1986.0521	0.8018	1.00
	PEPTIDE	UBIQ_HUMAN_UPS	TLSDYNIQKESTLHLVLR_3	Y	6	Y	2129.1481	0.9979	1.00
	PEPTIDE	UBIQ_HUMAN_UPS	TLSDYNIQKESTLHLVLR_4	Y	4	Y	2129.1481	0.9979	1.00
	PEPTIDE	UBIQ_HUMAN_UPS	TLSDYNIQK_2	Y	2	Y	1080.5451	0.7734	1.00
PROTEIN	47	GELS_HUMAN_UPS	1.0000	6	2	1	DPDQTDGLGLSYLSSHIANVER EPAHLMSLFGGKPMIIYKGGTSR	GELS_HUMAN_UPS	P06396ups
	PEPTIDE	GELS_HUMAN_UPS	DPDQTDGLGLSYLSSHIANVER_4	Y	2	Y	2386.1401	0.9979	1.00
	PEPTIDE	GELS_HUMAN_UPS	EPAHLMSLFGGKPMIIYKGGTSR_4	Y	4	Y	2489.2923	0.9979	1.00
PROTEIN	48	ALBU_HUMAN_UPS	1.0000	757	39	1	AACLLPK ADDKETCFAEEGKK AEFAEVSKLVTDLTK AVMDDFAAFVEK CCAAADPHECYAK CCTESLVNR CCTESLVNRRPCFSALEVDETYVPK DDNPNLPR EQLKAVMDDFAAFVEK HPDYSVVLLLR HPYFYAPELLFFAK HPYFYAPELLFFAKR KLVAASQAALGL KQTALVELVK LCTVATLR LDELRDEGK LKECCEKPLLEK LSQRFPK LVAASQAALGL LVNEVTEFAK LVRPEVDVMCTAFHDNEETFLK LVRPEVDVMCTAFHDNEETFLKK PCFSALEVDETYVPK PLVEEPQNLIK QNCELFEQLGEYK QNCELFEQLGEYKFQNALLVR QTALVELVK RHPDYSVVLLLR RHPYFYAPELLFFAK RHPYFYAPELLFFAKR RPCFSALEVDETYVPK SLHTLFGDK SLHTLFGDKLCTVATLR VFDEFKPLVEEPQNLIK VPQVSTPTLVEVSR YKAAFTECCQAADK YKAAFTECCQAADKAACLLPK YLYEIAR YTKKVPQVSTPTLVEVSR	ALBU_HUMAN_UPS	P02768ups
	PEPTIDE	ALBU_HUMAN_UPS	AACLLPK_2	Y	4	Y	771.4313	0.9446	1.00
	PEPTIDE	ALBU_HUMAN_UPS	ADDKETCFAEEGKK_3	Y	2	Y	1626.7196	0.9855	1.00
	PEPTIDE	ALBU_HUMAN_UPS	ADDKETCFAEEGKK_4	Y	6	Y	1626.7196	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	AEFAEVSKLVTDLTK_3	Y	2	Y	1649.8876	0.9895	1.00
	PEPTIDE	ALBU_HUMAN_UPS	AVMDDFAAFVEK_2	Y	43	Y	1341.6275	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	AVMDDFAAFVEK_3	Y	10	Y	1341.6275	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	CCAAADPHECYAK_3	Y	1	Y	1551.5906	0.2114	1.00
	PEPTIDE	ALBU_HUMAN_UPS	CCTESLVNRRPCFSALEVDETYVPK_3	Y	7	Y	3029.4046	0.9884	1.00
	PEPTIDE	ALBU_HUMAN_UPS	CCTESLVNRRPCFSALEVDETYVPK_4	Y	8	Y	3029.4046	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	CCTESLVNR_2	Y	9	Y	1137.4908	0.9800	1.00
	PEPTIDE	ALBU_HUMAN_UPS	DDNPNLPR_2	Y	2	Y	939.4410	0.8826	1.00
	PEPTIDE	ALBU_HUMAN_UPS	EQLKAVMDDFAAFVEK_2	Y	1	Y	1839.9077	0.9300	1.00
	PEPTIDE	ALBU_HUMAN_UPS	EQLKAVMDDFAAFVEK_3	Y	1	Y	1839.9077	0.9893	1.00
	PEPTIDE	ALBU_HUMAN_UPS	HPDYSVVLLLR_2	Y	3	Y	1310.7347	0.9879	1.00
	PEPTIDE	ALBU_HUMAN_UPS	HPDYSVVLLLR_3	Y	3	Y	1310.7347	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	HPYFYAPELLFFAKR_3	Y	1	Y	1897.9879	0.9918	1.00
	PEPTIDE	ALBU_HUMAN_UPS	HPYFYAPELLFFAK_2	Y	5	Y	1741.8868	0.9703	1.00
	PEPTIDE	ALBU_HUMAN_UPS	HPYFYAPELLFFAK_3	Y	28	Y	1741.8868	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	KLVAASQAALGL_2	Y	3	Y	1140.6867	0.8228	1.00
	PEPTIDE	ALBU_HUMAN_UPS	KQTALVELVK_3	Y	1	Y	1127.6914	0.9754	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LCTVATLR_2	Y	3	Y	932.5114	0.4431	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LDELRDEGK_2	Y	1	Y	1073.5353	0.3504	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LDELRDEGK_3	Y	1	Y	1073.5353	0.8626	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LKECCEKPLLEK_4	Y	5	Y	1545.7896	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LSQRFPK_2	Y	1	N	874.5025	0.0725	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LVAASQAALGL_2	Y	36	Y	1012.5917	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LVNEVTEFAK_2	Y	15	Y	1148.6077	0.9888	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LVRPEVDVMCTAFHDNEETFLKK_3	Y	11	Y	2777.3517	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LVRPEVDVMCTAFHDNEETFLKK_4	Y	34	Y	2777.3517	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LVRPEVDVMCTAFHDNEETFLKK_5	Y	41	Y	2777.3517	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LVRPEVDVMCTAFHDNEETFLK_3	Y	1	Y	2649.2567	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	LVRPEVDVMCTAFHDNEETFLK_4	Y	6	Y	2649.2567	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	PCFSALEVDETYVPK_2	Y	2	Y	1753.8233	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	PLVEEPQNLIK_2	Y	1	Y	1278.7184	0.9411	1.00
	PEPTIDE	ALBU_HUMAN_UPS	QNCELFEQLGEYKFQNALLVR_2	Y	1	Y	2598.2901	0.8799	1.00
	PEPTIDE	ALBU_HUMAN_UPS	QNCELFEQLGEYKFQNALLVR_3	Y	6	Y	2598.2901	0.9906	1.00
	PEPTIDE	ALBU_HUMAN_UPS	QNCELFEQLGEYK_2	Y	29	Y	1656.7454	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	QNCELFEQLGEYK_3	Y	2	Y	1656.7454	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	QTALVELVK_2	Y	3	Y	999.5964	0.9298	1.00
	PEPTIDE	ALBU_HUMAN_UPS	RHPDYSVVLLLR_2	Y	13	Y	1466.8358	0.9503	1.00
	PEPTIDE	ALBU_HUMAN_UPS	RHPDYSVVLLLR_3	Y	94	Y	1466.8358	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	RHPYFYAPELLFFAKR_4	Y	1	Y	2054.0890	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	RHPYFYAPELLFFAK_2	Y	7	Y	1897.9879	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	RHPYFYAPELLFFAK_3	Y	40	Y	1897.9879	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	RHPYFYAPELLFFAK_4	Y	10	Y	1897.9879	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	RPCFSALEVDETYVPK_2	Y	21	Y	1909.9244	0.9503	1.00
	PEPTIDE	ALBU_HUMAN_UPS	RPCFSALEVDETYVPK_3	Y	48	Y	1909.9244	0.9906	1.00
	PEPTIDE	ALBU_HUMAN_UPS	SLHTLFGDKLCTVATLR_2	Y	10	Y	1931.0299	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	SLHTLFGDKLCTVATLR_3	Y	6	Y	1931.0299	0.9917	1.00
	PEPTIDE	ALBU_HUMAN_UPS	SLHTLFGDKLCTVATLR_4	Y	49	Y	1931.0299	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	SLHTLFGDK_2	Y	1	Y	1016.5291	0.7784	1.00
	PEPTIDE	ALBU_HUMAN_UPS	VFDEFKPLVEEPQNLIK_2	Y	28	Y	2044.0881	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	VFDEFKPLVEEPQNLIK_3	Y	59	Y	2044.0881	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	VPQVSTPTLVEVSR_2	Y	17	Y	1510.8355	0.9888	1.00
	PEPTIDE	ALBU_HUMAN_UPS	VPQVSTPTLVEVSR_3	Y	1	Y	1510.8355	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	YKAAFTECCQAADKAACLLPK_3	Y	1	Y	2415.1386	0.9826	1.00
	PEPTIDE	ALBU_HUMAN_UPS	YKAAFTECCQAADKAACLLPK_4	Y	1	Y	2415.1386	0.9996	1.00
	PEPTIDE	ALBU_HUMAN_UPS	YKAAFTECCQAADK_3	Y	3	Y	1661.7178	0.9889	1.00
	PEPTIDE	ALBU_HUMAN_UPS	YLYEIAR_2	Y	5	Y	926.4862	0.8469	1.00
	PEPTIDE	ALBU_HUMAN_UPS	YTKKVPQVSTPTLVEVSR_3	Y	2	Y	2031.1364	0.9910	1.00
	PEPTIDE	ALBU_HUMAN_UPS	YTKKVPQVSTPTLVEVSR_4	Y	2	Y	2031.1364	0.9996	1.00
PROTEIN	49	shuff1_SYHC_HUMAN_UPS	0.3780	1	1	1	YVVSRALEITTTK	shuff1_SYHC_HUMAN_UPS	P12081ups
	PEPTIDE	shuff1_SYHC_HUMAN_UPS	YVVSRALEITTTK_3	Y	1	Y	1479.8297	0.3780	1.00
